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✏️ improve what's new documentation
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bneron committed Dec 15, 2023
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What's new in MacSyFinder v2?
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V 2.1.2
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master
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Features
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Support of *gziped* files
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MSF can also read *.gz* compressed files both for hmm profiles and sequences in fasta.
It will uncompress them on the fly.
The compressed files must end with the *.gz* extension.
For the `hmmsearch` step You need to have `gunzip` installed on your system for this to work.

search engine
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A group of hits that respect the distance constraints but each hit represent the same
gene on the model, is **not** considered as a *cluster*.

A group of hits that respect the distance constraints but all hits
represent a Neutral gene in model, is **not** considered as a *cluster*.

timeout improvement
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If a replicon is skipped due to timeout during best_solution phase.
The results corresponding to this replicon are not produced,
but a warning indicating that msf skip this replicon appear in outputs.


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V 2.1.1
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