🎨 update action testing workflow #25
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| name: testing | |
| on: | |
| push: | |
| branches: [ master ] | |
| pull_request: | |
| branches: [ master ] | |
| jobs: | |
| build: | |
| runs-on: ubuntu-latest | |
| strategy: | |
| matrix: | |
| python-version: ["3.10", "3.12"] | |
| steps: | |
| - uses: actions/checkout@v4 | |
| - name: Set up Python ${{ matrix.python-version }} | |
| uses: actions/setup-python@v5 | |
| with: | |
| python-version: ${{ matrix.python-version }} | |
| - name: Upgrade pip | |
| run: python -m pip install --upgrade pip | |
| - name: Install HMMER | |
| run: sudo apt-get -y install hmmer infernal prodigal | |
| - name: Install Integron_Finder | |
| run: python -m pip install .[dev] | |
| - name: Test and Compute the code coverage | |
| run: coverage run --source integron_finder tests/run_tests.py -vvv | |
| - name: Upload Coverage to Codecov | |
| uses: codecov/codecov-action@v4 | |
| if: matrix.python-version == '3.10' |