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command line params (source, destination), added temp dir config ability #48

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kylegoetz
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Current README file says you can specify source file and destination path in the command line arguments, but script ignores them. I added that functionality in.

Also I added in the ability to specify a tmp directory for intermediate steps because this process took up 13 GB of space on my laptop that I didn't have available.

If tmp directory is not specified, script defaults to /tmp, which is what was originally in the script.

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