Merge pull request #43 from gbouras13/0.3.2

update histry and bump version

HISTORY.md

@@ -1,25 +1,29 @@
-=======
-History
-=======
+# History
 
-0.3.0 (2023-08-18)
-------------------
+# 0.3.2 (2023-09-20)
+
+* Changes `Orffinder` to `Genefinder`  to support `pyrodigal` v3.
+* Updates dependency to `pyrodigal >=v3`.
+
+# 0.3.1 (2023-09-01)
+
+* Minor release to fix an error with dnaapler all #38 thanks @samnooij
+
+# 0.3.0 (2023-08-18)
 
 * `dnaapler all` subcommand added thanks @alexweisberg
 * `dnaapler all` implements `--ignore` to ignore some contigs
 
 
-0.2.0 (2023-08-08)
-------------------
+# 0.2.0 (2023-08-08)
 
 * `dnaapler nearest` subcommand added
 * `dnaapler bulk` subcommand added
 * dnaA database filtered to keep only bona-file dnaA genes (i.e. GN=dnaA)
 * Adds `-e` parameter to vary BLAST evalue if desired
 * Adds `-a` autocomplete parameter if user wants to reorient sequences with mystery or nearest methods in case the BLAST based method fails
 
-0.1.0 (2022-10-12)
-------------------
+# 0.1.0 (June 2023)
 
 * Completely overhauled
 * First stable released with pypi and conda 
@@ -30,7 +34,6 @@ History
 * `dnaapler plasmid` added
 
 
-0.0.1 (2022-10-12)
-------------------
+# 0.0.1 (2022-10-12)
 
 * First release (conda only `conda install -c gbouras dnaapler`)

pyproject.toml

@@ -1,6 +1,6 @@
 [tool.poetry]
 name = "dnaapler"
-version = "0.3.1" # change VERSION too
+version = "0.3.2" # change VERSION too
 description = "Reorients assembled microbial sequences"
 authors = ["George Bouras <[email protected]>"]
 license = "MIT"