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gbouras13 committed Aug 30, 2023
1 parent 5d3f793 commit 162a19a
Showing 1 changed file with 2 additions and 0 deletions.
2 changes: 2 additions & 0 deletions tests/test_overall.py
Original file line number Diff line number Diff line change
Expand Up @@ -182,12 +182,14 @@ def test_all_ignore(tmp_dir):
cmd = f"dnaapler all -i {input_fasta} -o {tmp_dir} -t 1 -f --ignore {ignore_file}"
exec_command(cmd)


def test_all_no_reorientation(tmp_dir):
"""test all where there is already orientation or no orientation"""
input_fasta: Path = f"{overall_test_data}/all_reorient_and_no_reorient.fasta"
cmd = f"dnaapler all -i {input_fasta} -o {tmp_dir} -t 1 -f"
exec_command(cmd)


def test_citation():
"""test citation"""
cmd = f"dnaapler citation"
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