Fix to avoid issue encountered in test suite. #225
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| name: CI Tests | |
| on: | |
| pull_request: | |
| push: | |
| workflow_dispatch: | |
| jobs: | |
| Sphinx-Pytest-Coverage: | |
| runs-on: ubuntu-latest | |
| strategy: | |
| fail-fast: false | |
| matrix: | |
| env: [environment_a, environment_b, conda-forge] | |
| steps: | |
| - uses: actions/checkout@v3 | |
| - uses: actions/cache@v3 | |
| id: cache | |
| with: | |
| path: /usr/share/miniconda/envs/im${{ matrix.env }} | |
| key: ${{ format('{0}-conda-improver-{1}-{2}', runner.os, matrix.env, hashFiles(format('envs/{0}.yml', matrix.env))) }} | |
| - name: conda env update | |
| if: steps.cache.outputs.cache-hit != 'true' | |
| run: | | |
| source '/usr/share/miniconda/etc/profile.d/conda.sh' | |
| conda install -c conda-forge mamba | |
| rm -f /usr/share/miniconda/pkgs/cache/*.json # workaround for mamba-org/mamba#488 | |
| mamba env update -q --file envs/${{ matrix.env }}.yml --name im${{ matrix.env }} | |
| - name: conda info | |
| run: | | |
| source '/usr/share/miniconda/etc/profile.d/conda.sh' | |
| conda activate im${{ matrix.env }} | |
| conda info | |
| conda list | |
| - name: sphinx documentation | |
| run: | | |
| source '/usr/share/miniconda/etc/profile.d/conda.sh' | |
| conda activate im${{ matrix.env }} | |
| make -C doc html SPHINXOPTS="-W --keep-going" | |
| - name: pytest without coverage | |
| if: matrix.env == 'conda-forge' | |
| run: | | |
| source '/usr/share/miniconda/etc/profile.d/conda.sh' | |
| conda activate im${{ matrix.env }} | |
| pytest | |
| - name: pytest with coverage | |
| if: matrix.env != 'conda-forge' | |
| run: | | |
| source '/usr/share/miniconda/etc/profile.d/conda.sh' | |
| conda activate im${{ matrix.env }} | |
| pytest --cov=improver --cov-report xml:coverage.xml | |
| - name: codacy upload | |
| if: env.CODACY_PROJECT_TOKEN && matrix.env == 'environment_a' | |
| run: | | |
| source '/usr/share/miniconda/etc/profile.d/conda.sh' | |
| conda activate im${{ matrix.env }} | |
| python-codacy-coverage -v -r coverage.xml | |
| env: | |
| CODACY_PROJECT_TOKEN: ${{ secrets.CODACY_PROJECT_TOKEN }} | |
| - name: codecov upload | |
| uses: codecov/codecov-action@v3 | |
| with: | |
| name: ${{ matrix.env }} | |
| if: matrix.env != 'conda_forge' | |
| Codestyle-and-flake8: | |
| runs-on: ubuntu-latest | |
| strategy: | |
| fail-fast: false | |
| matrix: | |
| env: [environment_a] | |
| steps: | |
| - uses: actions/checkout@v3 | |
| - uses: actions/cache@v3 | |
| id: cache | |
| with: | |
| path: /usr/share/miniconda/envs/im${{ matrix.env }} | |
| key: ${{ format('{0}-conda-improver-{1}-{2}', runner.os, matrix.env, hashFiles(format('envs/{0}.yml', matrix.env))) }} | |
| - name: conda env update | |
| if: steps.cache.outputs.cache-hit != 'true' | |
| run: | | |
| source '/usr/share/miniconda/etc/profile.d/conda.sh' | |
| conda install -c conda-forge mamba | |
| rm -f /usr/share/miniconda/pkgs/cache/*.json # workaround for mamba-org/mamba#488 | |
| mamba env update -q --file envs/${{ matrix.env }}.yml --name im${{ matrix.env }} | |
| - name: conda info | |
| run: | | |
| source '/usr/share/miniconda/etc/profile.d/conda.sh' | |
| conda activate im${{ matrix.env }} | |
| conda info | |
| conda list | |
| - name: isort | |
| run: | | |
| source '/usr/share/miniconda/etc/profile.d/conda.sh' | |
| conda activate im${{ matrix.env }} | |
| isort --check-only . | |
| - name: black | |
| run: | | |
| source '/usr/share/miniconda/etc/profile.d/conda.sh' | |
| conda activate im${{ matrix.env }} | |
| black --check . | |
| - name: flake8 | |
| run: | | |
| source '/usr/share/miniconda/etc/profile.d/conda.sh' | |
| conda activate im${{ matrix.env }} | |
| flake8 improver improver_tests | |
| PR-standards: | |
| runs-on: ubuntu-latest | |
| timeout-minutes: 10 | |
| steps: | |
| - name: Checkout | |
| uses: actions/checkout@v3 | |
| with: | |
| fetch-depth: 0 | |
| - name: Check CONTRIBUTING.md | |
| uses: cylc/release-actions/check-shortlog@v1 | |
| Safety-Bandit: | |
| runs-on: ubuntu-latest | |
| strategy: | |
| fail-fast: false | |
| matrix: | |
| env: [environment_a, environment_b, conda-forge] | |
| steps: | |
| - uses: actions/checkout@v3 | |
| - uses: actions/cache@v3 | |
| id: cache | |
| with: | |
| path: /usr/share/miniconda/envs/im${{ matrix.env }} | |
| key: ${{ format('{0}-conda-improver-{1}-{2}', runner.os, matrix.env, hashFiles(format('envs/{0}.yml', matrix.env))) }} | |
| - name: conda env update | |
| if: steps.cache.outputs.cache-hit != 'true' | |
| run: | | |
| source '/usr/share/miniconda/etc/profile.d/conda.sh' | |
| conda install -c conda-forge mamba | |
| rm -f /usr/share/miniconda/pkgs/cache/*.json # workaround for mamba-org/mamba#488 | |
| mamba env update -q --file envs/${{ matrix.env }}.yml --name im${{ matrix.env }} | |
| - name: conda info | |
| run: | | |
| source '/usr/share/miniconda/etc/profile.d/conda.sh' | |
| conda activate im${{ matrix.env }} | |
| conda info | |
| conda list | |
| - name: safety | |
| run: | | |
| source '/usr/share/miniconda/etc/profile.d/conda.sh' | |
| conda activate im${{ matrix.env }} | |
| safety check || true | |
| - name: bandit | |
| run: | | |
| source '/usr/share/miniconda/etc/profile.d/conda.sh' | |
| conda activate im${{ matrix.env }} | |
| bandit -r improver |