Add index for each score. Move to 2.0.1

galaxyproteomics · Mar 28, 2018 · 16d49e1 · 16d49e1
1 parent d4262bc
commit 16d49e1
Show file tree

Hide file tree

Showing 2 changed files with 12 additions and 1 deletion.
diff --git a/build.gradle b/build.gradle
@@ -1,7 +1,7 @@
 apply plugin: 'java'
 
 group = 'edu.umn.msi.gx'
-version = '2.0.0'
+version = '2.0.1'
 
 description = """
     New mzToSQLite removing DOM reading/building and using SAX reading only. 

diff --git a/src/main/java/edu/umn/msi/gx/database/MetaTableManager.java b/src/main/java/edu/umn/msi/gx/database/MetaTableManager.java
@@ -238,6 +238,17 @@ public static void createPSMTable() {
             //CREATE INDEX PSMBySeq ON psm_entries(sequence)
             stmt.executeUpdate("CREATE INDEX PSMBySeq ON psm_entries(sequence)");
             stmt.executeUpdate("CREATE INDEX PSMByPepRef ON psm_entries(id)");
+
+            //CREATE an INDEX for each score.
+            int sIDX = 0;
+            for (String sn : scoreTypes.keySet()) {
+                if (scoreTypes.get(sn).matches("REAL")) {
+                    String idxSql = "CREATE INDEX PSMByScore_" + sIDX + " ON psm_entries(\"" + sn + "\")";
+                    logger.info("Creating >> %s", idxSql);
+                    stmt.execute(idxSql);
+                    sIDX++;
+                }
+            }
             stmt.close();
             MetaTableManager.dbMgr.conn.commit();