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velvet: add OMP_THREAD_LIMIT #4641

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velvet: add OMP_THREAD_LIMIT #4641

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bernt-matthias
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@bernt-matthias bernt-matthias commented Jul 4, 2022 •
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if not set the roadmap files (and assemblies?) differ when using different numbers of cores

see also https://www.biostars.org/p/86907/

.. does not work for 1 CPU dzerbino/velvet#56

FOR CONTRIBUTOR:

  • - I have read the CONTRIBUTING.md document and this tool is appropriate for the tools-iuc repo.
  • - License permits unrestricted use (educational + commercial)
  • - This PR adds a new tool or tool collection
  • - This PR updates an existing tool or tool collection
  • - This PR does something else (explain below)

@bernt-matthias
velvet: add OMP_THREAD_LIMIT
8daca08 
if not set the roadmap files (and assemblies?) differ.

see also https://www.biostars.org/p/86907/
@bernt-matthias bernt-matthias mentioned this pull request Jul 4, 2022
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@bernt-matthias bernt-matthias marked this pull request as draft July 4, 2022 15:40
bgruening
bgruening approved these changes Jul 5, 2022
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Is this still draft?

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Yes, still a draft. Trying to figure out upstream how to fix this correctly. See linked issue.

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@bgruening bgruening bgruening approved these changes

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