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Updating workflows/microbiome/nanopore-pre-processing from 0.1 to 0.2 #458

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Updating workflows/microbiome/nanopore-pre-processing from 0.1 to 0.2 #458

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ade64b8
Updating workflows/microbiome/nanopore-pre-processing from 0.1 to 0.2
Jun 28, 2024
9714f1d
Update Nanopore-Pre-Processing.ga
bebatut Jul 3, 2024
fa67fd5
Updating workflows/microbiome/nanopore-pre-processing from 0.2 to 0.3
Aug 12, 2024
bc13143
Fixes
bebatut Aug 26, 2024
4c026c1
Fix up changelog
mvdbeek Aug 26, 2024
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6 changes: 6 additions & 0 deletions workflows/microbiome/nanopore-pre-processing/CHANGELOG.md
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# Changelog

## [0.1.1] 2024-08-26

### Automatic update
- `toolshed.g2.bx.psu.edu/repos/iuc/kraken2/kraken2/2.1.1+galaxy1` was updated to `toolshed.g2.bx.psu.edu/repos/iuc/kraken2/kraken2/2.1.3+galaxy1`
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- `toolshed.g2.bx.psu.edu/repos/devteam/fastqc/fastqc/0.74+galaxy0` was updated to `toolshed.g2.bx.psu.edu/repos/devteam/fastqc/fastqc/0.74+galaxy1`

## [0.1] 2024-04-25

First release.
34 changes: 17 additions & 17 deletions workflows/microbiome/nanopore-pre-processing/Nanopore-Pre-Processing.ga
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],
"format-version": "0.1",
"license": "MIT",
"release": "0.1",
"release": "0.1.1",
"name": "Nanopore Preprocessing",
"report": {
"markdown": "# Nanopore - Preprocessing Workflow Report\nBelow are the results of the Preprocessing Workflow\n\nThis workflow was run on:\n\n```galaxy\ngenerate_time()\n```\n\nWith Galaxy version:\n\n```galaxy\ngenerate_galaxy_version()\n```\n\n## Workflow Inputs\nA collection of all sample reads (all in the same sequence file format, e.g.: Fastq, Fastq.gz, Fastqsanger, etc.)\n\n## Workflow Outputs\n\n### Multi QC Report of all samples before reads quality retaining\n\n```galaxy\nhistory_dataset_as_image(output=\"multiQC_html_report_before_preprocessing\")\n```\n### Multi QC Report of all samples after reads quality retaining\n\n```galaxy\nhistory_dataset_as_image(output=\"multiQC_html_report_after_preprocessing\")\n```\n\n### Table of the total number of reads and the number of host reads\n\n```galaxy\nhistory_dataset_display(output=\"removed_hosts_percentage_tabular\")\n```\n\n"
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