Updating workflows/data-fetching/sra-manifest-to-concatenated-fastqs from 0.2 to 0.3 #290
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mvdbeek
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Nov 20, 2023
workflows/data-fetching/sra-manifest-to-concatenated-fastqs/CHANGELOG.md
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Only change is a minor change that fixes fasterq-dump under some circumstances.
mvdbeek
approved these changes
Nov 20, 2023
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Should we change the tool which concatenate? |
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If https://usegalaxy.org/root?tool_id=toolshed.g2.bx.psu.edu/repos/bgruening/text_processing/tp_cat/0.1.1 works for that task: 👍 |
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Unfortunately the tp_cat tool does handle the list:list:pair... We need to keep this tool. |
lldelisle
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Hello! This is an automated update of the following workflow: workflows/data-fetching/sra-manifest-to-concatenated-fastqs. I created this PR because I think one or more of the component tools are out of date, i.e. there is a newer version available on the ToolShed.
By comparing with the latest versions available on the ToolShed, it seems the following tools are outdated:
toolshed.g2.bx.psu.edu/repos/iuc/sra_tools/fasterq_dump/3.0.8+galaxy0should be updated totoolshed.g2.bx.psu.edu/repos/iuc/sra_tools/fasterq_dump/3.0.8+galaxy1The workflow release number has been updated from 0.2 to 0.3.