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v0.14.0
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@nsoranzo nsoranzo released this 05 Jul 09:38
v0.14.0
9b86895

  • Dropped support for Python 2.7. Dropped support for Galaxy releases 14.10-17.05. Added support for Python 3.8. Added support for Galaxy releases 19.09, 20.01 and 20.05.

  • Added a new invocations attribute to GalaxyInstance objects, which is an instance of the new InvocationClient class. This new module can be used to get all workflow invocations, show or cancel an invocation, show or pause an invocation step, get a summary or a report for an invocation (thanks to Simon Bray).

  • Added get_datasets() method to DatasetClient (thanks to Simon Bray).

  • Added import_history() method to HistoryClient (thanks to David Christiany and Marius van den Beek).

  • Added copy_dataset() method to HistoryClient (thanks to Simon Bray).

  • Added get_metrics() method to JobsClient (thanks to Andreas Skorczyk).

  • Added report_error() method to JobsClient (thanks to Peter Selten).

  • Added get_dataset_permissions() and set_dataset_permissions() methods to LibraryClient (thanks to Frederic Sapet).

  • Added update_user() method to UserClient (thanks to Anthony Bretaudeau).

  • Added update_workflow() method to WorkflowClient.

  • Added tags parameter to upload_file_from_url(), upload_file_contents(), upload_file_from_local_path(), upload_file_from_server() and upload_from_galaxy_filesystem() methods
    of LibraryClient (thanks to Anthony Bretaudeau).

  • Changed the default for the tag_using_filenames parameter of upload_file_from_server() and upload_from_galaxy_filesystem() methods of LibraryClient from True to False (thanks to Anthony Bretaudeau).

  • Added version parameter to show_workflow() and export_workflow_dict() methods of WorkflowClient.

  • Added inputs_by option to invoke_workflow() method of WorkflowClient (thanks to Marius van den Beek).

  • Removed deprecated show_stderr() and show_stdout methods of DatasetClient.

  • BioBlend.objects: Allowed workflow steps of type parameter_input and subworkflow. Added parameter_input_ids property to Workflow objects (reported by Nolan Woods).

  • Fixed HistoryClient.export_history(..., wait=False, maxwait=None) (reported by David Christiany).

  • Moved internal _make_url() method from GalaxyClient to Client class.

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