Skip to content
New issue

Have a question about this project? Sign up for a free GitHub account to open an issue and contact its maintainers and the community.

Sign up for GitHub

By clicking “Sign up for GitHub”, you agree to our terms of service and privacy statement. We’ll occasionally send you account related emails.

Already on GitHub? Sign in to your account

BDRSPS-1045 Move dwc:catalogNumber and dwc:collectionCode to the dwc:Occurrence node #341

Merged
merged 1 commit into from
Nov 20, 2024
Merged

BDRSPS-1045 Move dwc:catalogNumber and dwc:collectionCode to the dwc:Occurrence node #341

Show file tree
Hide file tree
Changes from all commits
Commits
Show all changes
1 commit
Select commit
File filter

Filter by extension

Filter by extension
Conversations
Failed to load comments.
Loading
Jump to
Jump to file
Failed to load files.
Loading
Diff view
Diff view
4 changes: 2 additions & 2 deletions ...ates/incidental_occurrence_data_v3/examples/margaret_river_flora/margaret_river_flora.csv
View file
Open in desktop
Original file line number Diff line number Diff line change
Expand Up @@ -11,7 +11,7 @@ providerRecordID,providerRecordIDSource,locality,decimalLatitude,decimalLongitud
10,WAM,Cowaramup Bay Road,-33.86,115.02,WGS84,,,26/09/2019,,,,Stream Environment and Water Pty Ltd,,,,,,,,,,,,,,,,,,,,,,,Caladenia excelsa,,Stream Environment and Water Pty Ltd,,Caladenia excelsa,,,,Plantae,,,,,,,,
11,WAM,Cowaramup Bay Road,-33.86,115.02,WGS84,,,26/09/2019,,,,Stream Environment and Water Pty Ltd,,,,,,,,,,,,,,,,,,,,,,,Caladenia ?excelsa,,Stream Environment and Water Pty Ltd,,Caladenia excelsa,?,One unopened flower when recorded and one leaf only. ID not confirmed,,Plantae,,,,,,,,
12,WAM,,-33.8,115.21,WGS84,,,26/09/2019,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,Caladenia excelsa,,,,Plantae,,,,,,,,
13,WAM,Cowaramup Bay Road,-33.86,115.02,WGS84,,,26/09/2019,,,PreservedSpecimen,Stream Environment and Water Pty Ltd,,,,,,,,,,,,,,,CC123,WAM,,,,,,,,,Stream Environment and Water Pty Ltd,,Caladenia excelsa,,,,Plantae,,,,,,,,
14,WAM,Cowaramup Bay Road,-33.86,115.02,WGS84,20,Coordinates rounded to the nearest 10 km for conservation concern,26/09/2019,,,HumanObservation,Stream Environment and Water Pty Ltd,,,,,,,5,individuals,,,,,,,CC456,WAM,,,,,,,Caladenia ?excelsa,,Stream Environment and Water Pty Ltd,,Caladenia excelsa,?,Could not confirm the ID due to damaged flower,,Plantae,,,,,,,,
13,WAM,Cowaramup Bay Road,-33.86,115.02,WGS84,,,26/09/2019,,,PreservedSpecimen,Stream Environment and Water Pty Ltd,,,,,,,,,,,,,,C01,CC123,WAM,,,,,,,,,Stream Environment and Water Pty Ltd,,Caladenia excelsa,,,,Plantae,,,,,,,,
14,WAM,Cowaramup Bay Road,-33.86,115.02,WGS84,20,Coordinates rounded to the nearest 10 km for conservation concern,26/09/2019,,,HumanObservation,Stream Environment and Water Pty Ltd,,,,,,,5,individuals,,,,,,C01,CC456,WAM,,,,,,,Caladenia ?excelsa,,Stream Environment and Water Pty Ltd,,Caladenia excelsa,?,Could not confirm the ID due to damaged flower,,Plantae,,,,,,,,
8022FSJMJ079c5cf,WAM,Cowaramup Bay Road,-33.8,115.21,WGS84,50,Coordinates rounded to the nearest 10 km for conservation concern,26/09/2019,,human observation,PreservedSpecimen,Stream Environment and Water Pty Ltd,PE:12:8832,present,"Closed forest of Melaleuca lanceolata. White, grey or brown sand, sandy loam.",native,Dried out leaf tips,2,,,adult,male,No breeding evident,MR-456,Stream Environment and Water Pty Ltd,32237,ARACH,WAM,BHP2012-7521 | M12378,BHP,Wet (in ethanol or some other preservative),26/09/2019,https://www.ncbi.nlm.nih.gov/nuccore/MH040669.1 | https://www.ncbi.nlm.nih.gov/nuccore/MH040616.1,Sanger dideoxy sequencing,Caladenia ?excelsa,2019-09-27T12:34+08:00,Stream Environment and Water Pty Ltd,Visually identified in the field (sighting),Caladenia excelsa,species incerta,no flowers present,Caladenia excelsa Hopper & A.P.Br.,Plantae,species,VU,WA,Check against Threatened and Priority Fauna List WA available from https://www.dpaw.wa.gov.au/plants-and-animals/threatened-species-and-communities/threatened-animals. Last updated 13 June 2022,,WA-BIO,,
ABC123,WAM,Cowaramup Bay Road,-33.8,115.21,WGS84,30,Coordinates generalised,26/09/2019,,new sampling protocol,new basis of record,Stream Environment and Water Pty Ltd,PE:12:8833,new occurrence status,new habitat,new establishment means,Leaves brown,6,,,new life stage,new sex,new reproductiveCondition,MR-457,Stream Environment and Water Pty Ltd,32238,ARACH,WAM,BHP2012-7522 | M12379,BHP,new preparations,27/09/2019,https://www.ncbi.nlm.nih.gov/nuccore/MH040669.1 | https://www.ncbi.nlm.nih.gov/nuccore/MH040616.1,new sequencing method,Caladenia ?excelsa,2019-09-27T12:34+08:00,Stream Environment and Water Pty Ltd,new identification method,Caladenia excelsa,new identification qualifier,new remarks,Caladenia excelsa Hopper & A.P.Br.,new kingdom,new taxon rank,new threat status,WA,a random selection,,,Category 1,The Department of Biodiversity and Conservation
102 changes: 36 additions & 66 deletions ...ates/incidental_occurrence_data_v3/examples/margaret_river_flora/margaret_river_flora.ttl
View file
Open in desktop
Original file line number Diff line number Diff line change
Expand Up @@ -15,7 +15,7 @@
<http://createme.org/OccurrenceCollection/basisOfRecord/HumanObservation> a schema:Collection ;
void:inDataset <http://createme.org/dataset/Example-Incidental-Occurrence-Dataset> ;
schema:identifier "Occurrence Collection - Basis Of Record - HumanObservation" ;
schema:member <http://createme.org/sample/specimen/14> ;
schema:member <http://createme.org/occurrence/14> ;
tern:hasAttribute <http://createme.org/attribute/basisOfRecord/HumanObservation> .

<http://createme.org/OccurrenceCollection/basisOfRecord/PreservedSpecimen> a schema:Collection ;
Expand Down Expand Up @@ -573,19 +573,6 @@
sosa:observedProperty <http://linked.data.gov.au/def/tern-cv/05cbf534-c233-4aa8-a08c-00b28976ed36> ;
sosa:usedProcedure <http://linked.data.gov.au/def/tern-cv/ea1d6342-1901-4f88-8482-3111286ec157> .

<http://createme.org/observation/specimen/verbatimIdentification/14> a tern:Observation ;
void:inDataset <http://createme.org/dataset/Example-Incidental-Occurrence-Dataset> ;
rdfs:comment "verbatimID-observation" ;
time:hasTime [ a time:Instant ;
rdfs:comment "Date unknown, template eventDateStart used as proxy" ;
time:inXSDDate "2019-09-26"^^xsd:date ] ;
prov:wasAssociatedWith <https://linked.data.gov.au/dataset/bdr/orgs/Stream-Environment-and-Water-Pty-Ltd> ;
sosa:hasFeatureOfInterest <http://createme.org/sample/specimen/14> ;
sosa:hasResult <http://createme.org/result/specimen/verbatimIdentification/Caladenia-excelsa> ;
sosa:hasSimpleResult "Caladenia ?excelsa" ;
sosa:observedProperty <http://linked.data.gov.au/def/tern-cv/70646576-6dc7-4bc5-a9d8-c4c366850df0> ;
sosa:usedProcedure <http://linked.data.gov.au/def/tern-cv/2eef4e87-beb3-449a-9251-f59f5c07d653> .

<http://createme.org/observation/specimen/verbatimIdentification/8022FSJMJ079c5cf> a tern:Observation ;
void:inDataset <http://createme.org/dataset/Example-Incidental-Occurrence-Dataset> ;
rdfs:comment "verbatimID-observation" ;
Expand Down Expand Up @@ -649,6 +636,19 @@
sosa:observedProperty <http://linked.data.gov.au/def/tern-cv/70646576-6dc7-4bc5-a9d8-c4c366850df0> ;
sosa:usedProcedure <http://linked.data.gov.au/def/tern-cv/2eef4e87-beb3-449a-9251-f59f5c07d653> .

<http://createme.org/observation/verbatimIdentification/14> a tern:Observation ;
void:inDataset <http://createme.org/dataset/Example-Incidental-Occurrence-Dataset> ;
rdfs:comment "verbatimID-observation" ;
time:hasTime [ a time:Instant ;
rdfs:comment "Date unknown, template eventDateStart used as proxy" ;
time:inXSDDate "2019-09-26"^^xsd:date ] ;
prov:wasAssociatedWith <https://linked.data.gov.au/dataset/bdr/orgs/Stream-Environment-and-Water-Pty-Ltd> ;
sosa:hasFeatureOfInterest <http://createme.org/occurrence/14> ;
sosa:hasResult <http://createme.org/result/verbatimIdentification/Caladenia-excelsa> ;
sosa:hasSimpleResult "Caladenia ?excelsa" ;
sosa:observedProperty <http://linked.data.gov.au/def/tern-cv/70646576-6dc7-4bc5-a9d8-c4c366850df0> ;
sosa:usedProcedure <http://linked.data.gov.au/def/tern-cv/2eef4e87-beb3-449a-9251-f59f5c07d653> .

<http://createme.org/observation/verbatimIdentification/2> a tern:Observation ;
void:inDataset <http://createme.org/dataset/Example-Incidental-Occurrence-Dataset> ;
rdfs:comment "verbatimID-observation" ;
Expand Down Expand Up @@ -1359,10 +1359,13 @@
rdf:value "Caladenia excelsa Hopper & A.P.Br." ;
tern:featureType <http://example.com/concept/acceptedNameUsage> .

<http://createme.org/result/specimen/verbatimIdentification/Caladenia-excelsa> a tern:Text,
tern:Value ;
rdf:value "Caladenia ?excelsa" .

<http://createme.org/sample/specimen/13> a tern:FeatureOfInterest,
tern:Sample ;
void:inDataset <http://createme.org/dataset/Example-Incidental-Occurrence-Dataset> ;
dwc:catalogNumber "CC123"^^<https://linked.data.gov.au/dataset/bdr/datatypes/catalogNumber/WAM> ;
rdfs:comment "specimen-sample" ;
sosa:isResultOf <http://createme.org/sampling/specimen/13> ;
sosa:isSampleOf <http://createme.org/occurrence/13> ;
Expand Down Expand Up @@ -1403,21 +1406,9 @@
sosa:hasResult <http://createme.org/sample/specimen/13> ;
sosa:usedProcedure <http://linked.data.gov.au/def/tern-cv/7930424c-f2e1-41fa-9128-61524b67dbd5> .

<http://createme.org/sampling/specimen/14> a tern:Sampling ;
void:inDataset <http://createme.org/dataset/Example-Incidental-Occurrence-Dataset> ;
geo:hasGeometry _:Nfc9ba55a50d500211c02e20000000003 ;
geo:hasMetricSpatialAccuracy 2e+01 ;
rdfs:comment "specimen-sampling" ;
time:hasTime [ a time:Instant ;
rdfs:comment "Date unknown, template eventDateStart used as proxy" ;
time:inXSDDate "2019-09-26"^^xsd:date ] ;
sosa:hasFeatureOfInterest <http://createme.org/occurrence/14> ;
sosa:hasResult <http://createme.org/sample/specimen/14> ;
sosa:usedProcedure <http://linked.data.gov.au/def/tern-cv/7930424c-f2e1-41fa-9128-61524b67dbd5> .

<http://createme.org/sampling/specimen/8022FSJMJ079c5cf> a tern:Sampling ;
void:inDataset <http://createme.org/dataset/Example-Incidental-Occurrence-Dataset> ;
geo:hasGeometry _:Nfc9ba55a50d500211c02e20000000005 ;
geo:hasGeometry _:Nfc9ba55a50d500211c02e20000000003 ;
geo:hasMetricSpatialAccuracy 5e+01 ;
rdfs:comment "specimen-sampling" ;
time:hasTime [ a time:Instant ;
Expand All @@ -1428,7 +1419,7 @@

<http://createme.org/sampling/specimen/ABC123> a tern:Sampling ;
void:inDataset <http://createme.org/dataset/Example-Incidental-Occurrence-Dataset> ;
geo:hasGeometry _:Nfc9ba55a50d500211c02e20000000007 ;
geo:hasGeometry _:Nfc9ba55a50d500211c02e20000000005 ;
geo:hasMetricSpatialAccuracy 3e+01 ;
rdfs:comment "specimen-sampling" ;
time:hasTime [ a time:Instant ;
Expand Down Expand Up @@ -1482,28 +1473,10 @@
rdf:value "Boronia anceps" ;
tern:featureType <http://example.com/concept/scientificName> .

<http://createme.org/result/specimen/verbatimIdentification/Caladenia-excelsa> a tern:Text,
tern:Value ;
rdf:value "Caladenia ?excelsa" .

<http://createme.org/result/verbatimIdentification/Boronia-anceps> a tern:Text,
tern:Value ;
rdf:value "Boronia anceps" .

<http://createme.org/result/verbatimIdentification/Caladenia-excelsa> a tern:Text,
tern:Value ;
rdf:value "Caladenia ?excelsa",
"Caladenia excelsa" .

<http://createme.org/sample/specimen/14> a tern:FeatureOfInterest,
tern:Sample ;
void:inDataset <http://createme.org/dataset/Example-Incidental-Occurrence-Dataset> ;
dwc:catalogNumber "CC456"^^<https://linked.data.gov.au/dataset/bdr/datatypes/catalogNumber/WAM> ;
rdfs:comment "specimen-sample" ;
sosa:isResultOf <http://createme.org/sampling/specimen/14> ;
sosa:isSampleOf <http://createme.org/occurrence/14> ;
tern:featureType <http://linked.data.gov.au/def/tern-cv/2e122e23-881c-43fa-a921-a8745f016ceb> .

<http://createme.org/occurrence/1> a dwc:Occurrence,
tern:FeatureOfInterest ;
void:inDataset <http://createme.org/dataset/Example-Incidental-Occurrence-Dataset> ;
Expand Down Expand Up @@ -1648,9 +1621,16 @@
tern:Value ;
rdf:value "Banksia sessilis var. cordata" .

<http://createme.org/result/verbatimIdentification/Caladenia-excelsa> a tern:Text,
tern:Value ;
rdf:value "Caladenia ?excelsa",
"Caladenia excelsa" .

<http://createme.org/occurrence/13> a dwc:Occurrence,
tern:FeatureOfInterest ;
void:inDataset <http://createme.org/dataset/Example-Incidental-Occurrence-Dataset> ;
dwc:catalogNumber "CC123"^^<https://linked.data.gov.au/dataset/bdr/datatypes/catalogNumber/WAM> ;
dwc:collectionCode "C01" ;
prov:wasAssociatedWith <https://linked.data.gov.au/dataset/bdr/orgs/Stream-Environment-and-Water-Pty-Ltd> ;
sosa:usedProcedure <https://linked.data.gov.au/def/nrm/a8db263e-7a39-5b85-a5d2-8e1af7ce1e39> ;
schema:spatial _:N489292b7f1191795326ddd2200000024 ;
Expand All @@ -1663,6 +1643,8 @@
<http://createme.org/occurrence/14> a dwc:Occurrence,
tern:FeatureOfInterest ;
void:inDataset <http://createme.org/dataset/Example-Incidental-Occurrence-Dataset> ;
dwc:catalogNumber "CC456"^^<https://linked.data.gov.au/dataset/bdr/datatypes/catalogNumber/WAM> ;
dwc:collectionCode "C01" ;
prov:wasAssociatedWith <https://linked.data.gov.au/dataset/bdr/orgs/Stream-Environment-and-Water-Pty-Ltd> ;
sosa:usedProcedure <https://linked.data.gov.au/def/nrm/a8db263e-7a39-5b85-a5d2-8e1af7ce1e39> ;
schema:spatial _:N489292b7f1191795326ddd2200000027 ;
Expand All @@ -1675,8 +1657,6 @@
<http://createme.org/sample/specimen/8022FSJMJ079c5cf> a tern:FeatureOfInterest,
tern:Sample ;
void:inDataset <http://createme.org/dataset/Example-Incidental-Occurrence-Dataset> ;
dwc:catalogNumber "ARACH"^^<https://linked.data.gov.au/dataset/bdr/datatypes/catalogNumber/WAM> ;
dwc:collectionCode "32237" ;
rdfs:comment "specimen-sample" ;
sosa:isResultOf <http://createme.org/sampling/specimen/8022FSJMJ079c5cf> ;
sosa:isSampleOf <http://createme.org/occurrence/8022FSJMJ079c5cf> ;
Expand All @@ -1685,8 +1665,6 @@
<http://createme.org/sample/specimen/ABC123> a tern:FeatureOfInterest,
tern:Sample ;
void:inDataset <http://createme.org/dataset/Example-Incidental-Occurrence-Dataset> ;
dwc:catalogNumber "ARACH"^^<https://linked.data.gov.au/dataset/bdr/datatypes/catalogNumber/WAM> ;
dwc:collectionCode "32238" ;
rdfs:comment "specimen-sample" ;
sosa:isResultOf <http://createme.org/sampling/specimen/ABC123> ;
sosa:isSampleOf <http://createme.org/occurrence/ABC123> ;
Expand All @@ -1703,6 +1681,8 @@
<http://createme.org/occurrence/8022FSJMJ079c5cf> a dwc:Occurrence,
tern:FeatureOfInterest ;
void:inDataset <http://createme.org/dataset/Example-Incidental-Occurrence-Dataset> ;
dwc:catalogNumber "ARACH"^^<https://linked.data.gov.au/dataset/bdr/datatypes/catalogNumber/WAM> ;
dwc:collectionCode "32237" ;
prov:wasAssociatedWith <https://linked.data.gov.au/dataset/bdr/orgs/Stream-Environment-and-Water-Pty-Ltd> ;
sosa:usedProcedure <http://linked.data.gov.au/def/tern-cv/ea1d6342-1901-4f88-8482-3111286ec157> ;
schema:identifier "BHP2012-7521"^^<https://linked.data.gov.au/dataset/bdr/datatypes/catalogNumber/BHP>,
Expand All @@ -1719,6 +1699,8 @@
<http://createme.org/occurrence/ABC123> a dwc:Occurrence,
tern:FeatureOfInterest ;
void:inDataset <http://createme.org/dataset/Example-Incidental-Occurrence-Dataset> ;
dwc:catalogNumber "ARACH"^^<https://linked.data.gov.au/dataset/bdr/datatypes/catalogNumber/WAM> ;
dwc:collectionCode "32238" ;
prov:wasAssociatedWith <https://linked.data.gov.au/dataset/bdr/orgs/Stream-Environment-and-Water-Pty-Ltd> ;
sosa:usedProcedure <http://createme.org/bdr-cv/methods/samplingProtocol/new-sampling-protocol> ;
schema:identifier "BHP2012-7522"^^<https://linked.data.gov.au/dataset/bdr/datatypes/catalogNumber/BHP>,
Expand Down Expand Up @@ -1896,26 +1878,18 @@
rdf:subject <http://createme.org/sampling/specimen/13> ;
rdfs:comment "supplied as" .

[] a rdf:Statement ;
geo:hasGeometry [ a geo:Geometry ;
geo:asWKT "<http://www.opengis.net/def/crs/EPSG/0/4326> POINT (-33.86 115.02)"^^geo:wktLiteral ] ;
rdf:object _:Nfc9ba55a50d500211c02e20000000003 ;
rdf:predicate geo:hasGeometry ;
rdf:subject <http://createme.org/sampling/specimen/14> ;
rdfs:comment "supplied as" .

[] a rdf:Statement ;
geo:hasGeometry [ a geo:Geometry ;
geo:asWKT "<http://www.opengis.net/def/crs/EPSG/0/4326> POINT (-33.8 115.21)"^^geo:wktLiteral ] ;
rdf:object _:Nfc9ba55a50d500211c02e20000000005 ;
rdf:object _:Nfc9ba55a50d500211c02e20000000003 ;
rdf:predicate geo:hasGeometry ;
rdf:subject <http://createme.org/sampling/specimen/8022FSJMJ079c5cf> ;
rdfs:comment "supplied as" .

[] a rdf:Statement ;
geo:hasGeometry [ a geo:Geometry ;
geo:asWKT "<http://www.opengis.net/def/crs/EPSG/0/4326> POINT (-33.8 115.21)"^^geo:wktLiteral ] ;
rdf:object _:Nfc9ba55a50d500211c02e20000000007 ;
rdf:object _:Nfc9ba55a50d500211c02e20000000005 ;
rdf:predicate geo:hasGeometry ;
rdf:subject <http://createme.org/sampling/specimen/ABC123> ;
rdfs:comment "supplied as" .
Expand Down Expand Up @@ -1984,14 +1958,10 @@ _:Nfc9ba55a50d500211c02e20000000001 a geo:Geometry ;
rdfs:comment "Location unknown, location of field sampling used as proxy" .

_:Nfc9ba55a50d500211c02e20000000003 a geo:Geometry ;
geo:asWKT "<http://www.opengis.net/def/crs/EPSG/0/7844> POINT (-33.86 115.02)"^^geo:wktLiteral ;
rdfs:comment "Location unknown, location of field sampling used as proxy" .

_:Nfc9ba55a50d500211c02e20000000005 a geo:Geometry ;
geo:asWKT "<http://www.opengis.net/def/crs/EPSG/0/7844> POINT (-33.8 115.21)"^^geo:wktLiteral ;
rdfs:comment "Location unknown, location of field sampling used as proxy" .

_:Nfc9ba55a50d500211c02e20000000007 a geo:Geometry ;
_:Nfc9ba55a50d500211c02e20000000005 a geo:Geometry ;
geo:asWKT "<http://www.opengis.net/def/crs/EPSG/0/7844> POINT (-33.8 115.21)"^^geo:wktLiteral ;
rdfs:comment "Location unknown, location of field sampling used as proxy" .

Loading