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BDRSPS-875 Updated all dcterms namespaced iris to sdo equivalent for current templates and associated shared code. #252

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merged 3 commits into from
Oct 9, 2024
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BDRSPS-875 Updated all dcterms namespaced iris to sdo equivalent for current templates and associated shared code. #252

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3f0703a
updated all dcterms namespaced iris to sdo equivalent for current tem…
joecrowleygaia Oct 8, 2024
aa67f50
tab 4 space fixup.
joecrowleygaia Oct 8, 2024
3b75650
changed SDO.type to SDO.additionalType
joecrowleygaia Oct 9, 2024
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6 changes: 3 additions & 3 deletions abis_mapping/base/mapper.py
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Original file line number Diff line number Diff line change
Expand Up @@ -85,9 +85,9 @@ def add_default_dataset(
"""
# Add Default Dataset to Graph
graph.add((uri, a, utils.namespaces.TERN.Dataset))
graph.add((uri, rdflib.DCTERMS.title, rdflib.Literal(self.DATASET_DEFAULT_NAME)))
graph.add((uri, rdflib.DCTERMS.description, rdflib.Literal(self.DATASET_DEFAULT_DESCRIPTION)))
graph.add((uri, rdflib.DCTERMS.issued, types.temporal.Date.today().to_rdf_literal()))
graph.add((uri, rdflib.SDO.name, rdflib.Literal(self.DATASET_DEFAULT_NAME)))
graph.add((uri, rdflib.SDO.description, rdflib.Literal(self.DATASET_DEFAULT_DESCRIPTION)))
graph.add((uri, rdflib.SDO.dateIssued, types.temporal.Date.today().to_rdf_literal()))

def add_geometry_supplied_as(
self,
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53 changes: 27 additions & 26 deletions ...mplates/incidental_occurrence_data/examples/margaret_river_flora/margaret_river_flora.ttl
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Expand Up @@ -5,6 +5,7 @@
@prefix prov: <http://www.w3.org/ns/prov#> .
@prefix rdf: <http://www.w3.org/1999/02/22-rdf-syntax-ns#> .
@prefix rdfs: <http://www.w3.org/2000/01/rdf-schema#> .
@prefix schema: <https://schema.org/> .
@prefix skos: <http://www.w3.org/2004/02/skos/core#> .
@prefix sosa: <http://www.w3.org/ns/sosa/> .
@prefix tern: <https://w3id.org/tern/ontologies/tern/> .
Expand Down Expand Up @@ -920,138 +921,138 @@
tern:hasValue <http://createme.org/value/taxonRank/16> .

<http://createme.org/bdr-cv/attribute/basisOfRecord/new-basis-of-record> a skos:Concept ;
dcterms:source "http://createme.org/dataset/Example-Incidental-Occurrence-Dataset"^^xsd:anyURI ;
schema:citation "http://createme.org/dataset/Example-Incidental-Occurrence-Dataset"^^xsd:anyURI ;
skos:broader <http://example.com/bdr-cv/attribute/basisOfRecord> ;
skos:definition "A type of basisOfRecord." ;
skos:inScheme <http://linked.data.gov.au/def/tern-cv/dd085299-ae86-4371-ae15-61dfa432f924> ;
skos:prefLabel "new basis of record" .

<http://createme.org/bdr-cv/attribute/identificationQualifier/new-identification-qualifier> a skos:Concept ;
dcterms:source "http://createme.org/dataset/Example-Incidental-Occurrence-Dataset"^^xsd:anyURI ;
schema:citation "http://createme.org/dataset/Example-Incidental-Occurrence-Dataset"^^xsd:anyURI ;
skos:broader <http://example.com/bdr-cv/attribute/identificationQualifier> ;
skos:definition "A type of identificationQualifier." ;
skos:inScheme <http://linked.data.gov.au/def/tern-cv/dd085299-ae86-4371-ae15-61dfa432f924> ;
skos:prefLabel "new identification qualifier" .

<http://createme.org/bdr-cv/attribute/kingdom/new-kingdom> a skos:Concept ;
dcterms:source "http://createme.org/dataset/Example-Incidental-Occurrence-Dataset"^^xsd:anyURI ;
schema:citation "http://createme.org/dataset/Example-Incidental-Occurrence-Dataset"^^xsd:anyURI ;
skos:broader <http://example.com/bdr-cv/attribute/kingdom> ;
skos:definition "A type of kingdom." ;
skos:inScheme <http://linked.data.gov.au/def/tern-cv/dd085299-ae86-4371-ae15-61dfa432f924> ;
skos:prefLabel "new kingdom" .

<http://createme.org/bdr-cv/attribute/preparations/Wet-in-ethanol-or-some-other-preservative> a skos:Concept ;
dcterms:source "http://createme.org/dataset/Example-Incidental-Occurrence-Dataset"^^xsd:anyURI ;
schema:citation "http://createme.org/dataset/Example-Incidental-Occurrence-Dataset"^^xsd:anyURI ;
skos:broader <http://example.com/bdr-cv/attribute/preparations> ;
skos:definition "A type of preparations." ;
skos:inScheme <http://linked.data.gov.au/def/tern-cv/dd085299-ae86-4371-ae15-61dfa432f924> ;
skos:prefLabel "Wet (in ethanol or some other preservative)" .

<http://createme.org/bdr-cv/attribute/preparations/new-preparations> a skos:Concept ;
dcterms:source "http://createme.org/dataset/Example-Incidental-Occurrence-Dataset"^^xsd:anyURI ;
schema:citation "http://createme.org/dataset/Example-Incidental-Occurrence-Dataset"^^xsd:anyURI ;
skos:broader <http://example.com/bdr-cv/attribute/preparations> ;
skos:definition "A type of preparations." ;
skos:inScheme <http://linked.data.gov.au/def/tern-cv/dd085299-ae86-4371-ae15-61dfa432f924> ;
skos:prefLabel "new preparations" .

<http://createme.org/bdr-cv/attribute/taxonRank/new-taxon-rank> a skos:Concept ;
dcterms:source "http://createme.org/dataset/Example-Incidental-Occurrence-Dataset"^^xsd:anyURI ;
schema:citation "http://createme.org/dataset/Example-Incidental-Occurrence-Dataset"^^xsd:anyURI ;
skos:broader <http://example.com/bdr-cv/attribute/taxonRank> ;
skos:definition "A type of taxonRank." ;
skos:inScheme <http://linked.data.gov.au/def/tern-cv/dd085299-ae86-4371-ae15-61dfa432f924> ;
skos:prefLabel "new taxon rank" .

<http://createme.org/bdr-cv/featureType/occurrence/kingdom/new-kingdom> a skos:Concept ;
dcterms:source "http://createme.org/dataset/Example-Incidental-Occurrence-Dataset"^^xsd:anyURI ;
schema:citation "http://createme.org/dataset/Example-Incidental-Occurrence-Dataset"^^xsd:anyURI ;
skos:definition "The existence of the organism from this kingdom sampled at a particular place at a particular time." ;
skos:inScheme <http://linked.data.gov.au/def/tern-cv/68af3d25-c801-4089-afff-cf701e2bd61d> ;
skos:prefLabel "new kingdom occurrence" .

<http://createme.org/bdr-cv/featureType/specimen/kingdom/new-kingdom> a skos:Concept ;
dcterms:source "http://createme.org/dataset/Example-Incidental-Occurrence-Dataset"^^xsd:anyURI ;
schema:citation "http://createme.org/dataset/Example-Incidental-Occurrence-Dataset"^^xsd:anyURI ;
skos:definition "A specimen sampled from an organism of this kingdom." ;
skos:inScheme <http://linked.data.gov.au/def/tern-cv/68af3d25-c801-4089-afff-cf701e2bd61d> ;
skos:prefLabel "new kingdom specimen" .

<http://createme.org/bdr-cv/methods/samplingProtocol/new-sampling-protocol> a skos:Concept ;
dcterms:source "http://createme.org/dataset/Example-Incidental-Occurrence-Dataset"^^xsd:anyURI ;
schema:citation "http://createme.org/dataset/Example-Incidental-Occurrence-Dataset"^^xsd:anyURI ;
skos:broader <http://example.com/bdr-cv/methods/samplingProtocol> ;
skos:definition "A type of samplingProtocol." ;
skos:inScheme <http://linked.data.gov.au/def/tern-cv/2fd44aca-168f-4177-b393-0688ce38102c> ;
skos:prefLabel "new sampling protocol" .

<http://createme.org/bdr-cv/methods/sequencingMethod/Sanger-dideoxy-sequencing> a skos:Concept ;
dcterms:source "http://createme.org/dataset/Example-Incidental-Occurrence-Dataset"^^xsd:anyURI ;
schema:citation "http://createme.org/dataset/Example-Incidental-Occurrence-Dataset"^^xsd:anyURI ;
skos:broader <http://example.com/bdr-cv/methods/sequencingMethod> ;
skos:definition "A type of sequencingMethod." ;
skos:inScheme <http://linked.data.gov.au/def/tern-cv/2fd44aca-168f-4177-b393-0688ce38102c> ;
skos:prefLabel "Sanger dideoxy sequencing" .

<http://createme.org/bdr-cv/methods/sequencingMethod/new-sequencing-method> a skos:Concept ;
dcterms:source "http://createme.org/dataset/Example-Incidental-Occurrence-Dataset"^^xsd:anyURI ;
schema:citation "http://createme.org/dataset/Example-Incidental-Occurrence-Dataset"^^xsd:anyURI ;
skos:broader <http://example.com/bdr-cv/methods/sequencingMethod> ;
skos:definition "A type of sequencingMethod." ;
skos:inScheme <http://linked.data.gov.au/def/tern-cv/2fd44aca-168f-4177-b393-0688ce38102c> ;
skos:prefLabel "new sequencing method" .

<http://createme.org/bdr-cv/methods/threatStatusCheckProtocol/Check-against-Threatened-and-Priority-Fauna-List-WA-available-from-https//www-dpaw-wa-gov-au/plants-and-animals/threatened-species-and-communities/threatened-animals-Last-updated-13-June-2022> a skos:Concept ;
dcterms:source "http://createme.org/dataset/Example-Incidental-Occurrence-Dataset"^^xsd:anyURI ;
schema:citation "http://createme.org/dataset/Example-Incidental-Occurrence-Dataset"^^xsd:anyURI ;
skos:broader <http://example.com/bdr-cv/methods/threatStatusCheckProtocol> ;
skos:definition "A type of threatStatusCheckProtocol." ;
skos:inScheme <http://linked.data.gov.au/def/tern-cv/2fd44aca-168f-4177-b393-0688ce38102c> ;
skos:prefLabel "Check against Threatened and Priority Fauna List WA available from https://www.dpaw.wa.gov.au/plants-and-animals/threatened-species-and-communities/threatened-animals. Last updated 13 June 2022" .

<http://createme.org/bdr-cv/methods/threatStatusCheckProtocol/a-random-selection> a skos:Concept ;
dcterms:source "http://createme.org/dataset/Example-Incidental-Occurrence-Dataset"^^xsd:anyURI ;
schema:citation "http://createme.org/dataset/Example-Incidental-Occurrence-Dataset"^^xsd:anyURI ;
skos:broader <http://example.com/bdr-cv/methods/threatStatusCheckProtocol> ;
skos:definition "A type of threatStatusCheckProtocol." ;
skos:inScheme <http://linked.data.gov.au/def/tern-cv/2fd44aca-168f-4177-b393-0688ce38102c> ;
skos:prefLabel "a random selection" .

<http://createme.org/bdr-cv/parameter/establishmentMeans/new-establishment-means> a skos:Concept ;
dcterms:source "http://createme.org/dataset/Example-Incidental-Occurrence-Dataset"^^xsd:anyURI ;
schema:citation "http://createme.org/dataset/Example-Incidental-Occurrence-Dataset"^^xsd:anyURI ;
skos:broader <http://example.com/bdr-cv/parameter/establishmentMeans> ;
skos:definition "A type of establishmentMeans." ;
skos:inScheme <http://linked.data.gov.au/def/tern-cv/5699eca7-9ef0-47a6-bcfb-9306e0e2b85e> ;
skos:prefLabel "new establishment means" .

<http://createme.org/bdr-cv/parameter/lifeStage/new-life-stage> a skos:Concept ;
dcterms:source "http://createme.org/dataset/Example-Incidental-Occurrence-Dataset"^^xsd:anyURI ;
schema:citation "http://createme.org/dataset/Example-Incidental-Occurrence-Dataset"^^xsd:anyURI ;
skos:broader <http://example.com/bdr-cv/parameter/lifeStage> ;
skos:definition "A type of lifeStage." ;
skos:inScheme <http://linked.data.gov.au/def/tern-cv/5699eca7-9ef0-47a6-bcfb-9306e0e2b85e> ;
skos:prefLabel "new life stage" .

<http://createme.org/bdr-cv/parameter/occurrenceStatus/new-occurrence-status> a skos:Concept ;
dcterms:source "http://createme.org/dataset/Example-Incidental-Occurrence-Dataset"^^xsd:anyURI ;
schema:citation "http://createme.org/dataset/Example-Incidental-Occurrence-Dataset"^^xsd:anyURI ;
skos:broader <http://example.com/bdr-cv/parameter/occurrenceStatus> ;
skos:definition "A type of occurrenceStatus." ;
skos:inScheme <http://linked.data.gov.au/def/tern-cv/5699eca7-9ef0-47a6-bcfb-9306e0e2b85e> ;
skos:prefLabel "new occurrence status" .

<http://createme.org/bdr-cv/parameter/reproductiveCondition/No-breeding-evident> a skos:Concept ;
dcterms:source "http://createme.org/dataset/Example-Incidental-Occurrence-Dataset"^^xsd:anyURI ;
schema:citation "http://createme.org/dataset/Example-Incidental-Occurrence-Dataset"^^xsd:anyURI ;
skos:broader <http://example.com/bdr-cv/parameter/reproductiveCondition> ;
skos:definition "A type of reproductiveCondition." ;
skos:inScheme <http://linked.data.gov.au/def/tern-cv/5699eca7-9ef0-47a6-bcfb-9306e0e2b85e> ;
skos:prefLabel "No breeding evident" .

<http://createme.org/bdr-cv/parameter/reproductiveCondition/new-reproductiveCondition> a skos:Concept ;
dcterms:source "http://createme.org/dataset/Example-Incidental-Occurrence-Dataset"^^xsd:anyURI ;
schema:citation "http://createme.org/dataset/Example-Incidental-Occurrence-Dataset"^^xsd:anyURI ;
skos:broader <http://example.com/bdr-cv/parameter/reproductiveCondition> ;
skos:definition "A type of reproductiveCondition." ;
skos:inScheme <http://linked.data.gov.au/def/tern-cv/5699eca7-9ef0-47a6-bcfb-9306e0e2b85e> ;
skos:prefLabel "new reproductiveCondition" .

<http://createme.org/bdr-cv/parameter/sex/new-sex> a skos:Concept ;
dcterms:source "http://createme.org/dataset/Example-Incidental-Occurrence-Dataset"^^xsd:anyURI ;
schema:citation "http://createme.org/dataset/Example-Incidental-Occurrence-Dataset"^^xsd:anyURI ;
skos:broader <http://example.com/bdr-cv/parameter/sex> ;
skos:definition "A type of sex." ;
skos:inScheme <http://linked.data.gov.au/def/tern-cv/5699eca7-9ef0-47a6-bcfb-9306e0e2b85e> ;
skos:prefLabel "new sex" .

<http://createme.org/bdr-cv/parameter/threatStatus/WA/new-threat-status> a skos:Concept ;
dcterms:source "http://createme.org/dataset/Example-Incidental-Occurrence-Dataset"^^xsd:anyURI ;
schema:citation "http://createme.org/dataset/Example-Incidental-Occurrence-Dataset"^^xsd:anyURI ;
skos:broader <http://example.com/bdr-cv/parameter/threatStatus> ;
skos:definition "A type of threatStatus." ;
skos:inScheme <http://linked.data.gov.au/def/tern-cv/5699eca7-9ef0-47a6-bcfb-9306e0e2b85e> ;
Expand Down Expand Up @@ -1529,21 +1530,21 @@
tern:hasValue <http://createme.org/value/dataGeneralizations/16> .

<http://createme.org/bdr-cv/attribute/identificationQualifier/> a skos:Concept ;
dcterms:source "http://createme.org/dataset/Example-Incidental-Occurrence-Dataset"^^xsd:anyURI ;
schema:citation "http://createme.org/dataset/Example-Incidental-Occurrence-Dataset"^^xsd:anyURI ;
skos:broader <http://example.com/bdr-cv/attribute/identificationQualifier> ;
skos:definition "A type of identificationQualifier." ;
skos:inScheme <http://linked.data.gov.au/def/tern-cv/dd085299-ae86-4371-ae15-61dfa432f924> ;
skos:prefLabel "?" .

<http://createme.org/bdr-cv/methods/identificationMethod/Visually-identified-in-the-field-sighting> a skos:Concept ;
dcterms:source "http://createme.org/dataset/Example-Incidental-Occurrence-Dataset"^^xsd:anyURI ;
schema:citation "http://createme.org/dataset/Example-Incidental-Occurrence-Dataset"^^xsd:anyURI ;
skos:broader <http://example.com/bdr-cv/methods/identificationMethod> ;
skos:definition "A type of identificationMethod." ;
skos:inScheme <http://linked.data.gov.au/def/tern-cv/2fd44aca-168f-4177-b393-0688ce38102c> ;
skos:prefLabel "Visually identified in the field (sighting)" .

<http://createme.org/bdr-cv/methods/identificationMethod/new-identification-method> a skos:Concept ;
dcterms:source "http://createme.org/dataset/Example-Incidental-Occurrence-Dataset"^^xsd:anyURI ;
schema:citation "http://createme.org/dataset/Example-Incidental-Occurrence-Dataset"^^xsd:anyURI ;
skos:broader <http://example.com/bdr-cv/methods/identificationMethod> ;
skos:definition "A type of identificationMethod." ;
skos:inScheme <http://linked.data.gov.au/def/tern-cv/2fd44aca-168f-4177-b393-0688ce38102c> ;
Expand Down Expand Up @@ -2063,9 +2064,9 @@
foaf:name "Stream Environment and Water Pty Ltd" .

<http://createme.org/dataset/Example-Incidental-Occurrence-Dataset> a tern:Dataset ;
dcterms:description "Example Incidental Occurrence Dataset by Gaia Resources" ;
dcterms:issued "2024-03-13"^^xsd:date ;
dcterms:title "Example Incidental Occurrence Dataset" .
schema:description "Example Incidental Occurrence Dataset by Gaia Resources" ;
schema:dateIssued "2024-03-13"^^xsd:date ;
schema:name "Example Incidental Occurrence Dataset" .

[] a rdf:Statement ;
geo:hasGeometry [ a geo:Geometry ;
Expand Down
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