Merge pull request #335 from gaiaresources/BDRSPS-1039

BDRSPS-1039 Add void:inDataset properties to the prov:Plan nodes
gaiaresources · Nov 19, 2024 · a66d850 · a66d850
2 parents 28e38f7 + aeebc3c
commit a66d850
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diff --git a/abis_mapping/templates/survey_metadata_v2/examples/minimal.ttl b/abis_mapping/templates/survey_metadata_v2/examples/minimal.ttl
@@ -145,6 +145,7 @@
     schema:name "Disentangling the effects of farmland use, habitat edges, and vegetation structure on ground beetle morphological traits - Summer" .
 
 <http://createme.org/survey/plan/COL1> a prov:Plan ;
+    void:inDataset <http://createme.org/dataset/Example-Systematic-Survey-Metadata-Dataset> ;
     schema:citation "Ng, K., Barton, P.S., Blanchard, W. et al. Disentangling the effects of farmland use, habitat edges, and vegetation structure on ground beetle morphological traits. Oecologia 188, 645–657 (2018). https://doi.org/10.1007/s00442-018-4180-9\"" ;
     schema:description "Our experimental design consisted of four 400 m transects running from inside each woodland patch out into four adjoining farmland uses (crop, rested, woody debris application, revegetation plantings). To quantify potential edge efects on beetle species traits, we sampled beetles at five locations along each transect: 200 and 20 m inside woodlands, 200 and 20 m inside farmlands, and at the woodland–farmland edge (0 m). Each sampling location comprised a pair of wet invertebrate pitfall traps.  separated by a drift fence (60 cm long x 10 cm high) to help direct arthropods into traps. We opened a total of 220 pairs of traps for 14 days during spring (Oct–Nov 2014), and repeated sampling during summer (January–February 2015). Beetle samples from each pitfall trap pair, and across the two time periods, were pooled to provide one sample per sampling location." ;
     schema:url "https://biocollect.ala.org.au/document/download/2022-01/202201%20CBR%20Flora%20and%20Vegetation%20report_draftv1.pdf"^^xsd:anyURI,

diff --git a/abis_mapping/templates/survey_metadata_v2/mapping.py b/abis_mapping/templates/survey_metadata_v2/mapping.py
@@ -316,6 +316,7 @@ def apply_mapping_row(
         self.add_plan(
             uri=survey_plan,
             row=row,
+            dataset=dataset,
             graph=graph,
         )
 
@@ -626,18 +627,23 @@ def add_plan(
         self,
         uri: rdflib.URIRef,
         row: frictionless.Row,
+        dataset: rdflib.URIRef,
         graph: rdflib.Graph,
     ) -> None:
         """Adds plan to graph.
 
         Args:
             uri: Plan reference.
             row: Raw data row.
+            dataset: URI for the dataset node.
             graph: Graph to be modified.
         """
         # Add type
         graph.add((uri, a, rdflib.PROV.Plan))
 
+        # add link to dataset
+        graph.add((uri, rdflib.VOID.inDataset, dataset))
+
         # Add citation(s)
         if citations := row["surveyMethodCitation"]:
             for citation in citations:

diff --git a/abis_mapping/templates/survey_site_visit_data_v2/examples/minimal.ttl b/abis_mapping/templates/survey_site_visit_data_v2/examples/minimal.ttl
@@ -138,14 +138,17 @@
     rdf:value <http://createme.org/bdr-cv/attribute/targetTaxonomicScope/new-taxon> .
 
 <http://createme.org/visit/plan/TIS-24-03-P1-01> a prov:Plan ;
+    void:inDataset <http://createme.org/dataset/Example-Systematic-Survey-Site-Visit-Dataset> ;
     sosa:usedProcedure <https://linked.data.gov.au/def/nrm/4caf0cde-9ffb-56c2-bdc6-17c4c2a7275a> ;
     schema:description "10 x square buckets of size 20 x 20 x 15 cm. Propylene glycol." .
 
 <http://createme.org/visit/plan/TIS-24-03-P1-02> a prov:Plan ;
+    void:inDataset <http://createme.org/dataset/Example-Systematic-Survey-Site-Visit-Dataset> ;
     sosa:usedProcedure <http://createme.org/bdr-cv/attribute/protocolName/litter-sifting> ;
     schema:description "50 cm diameter sifter with 5 mm mesh. Litter samles taken ~1 metre from each pitfall trap" .
 
 <http://createme.org/visit/plan/TIS-24-03-P1-03> a prov:Plan ;
+    void:inDataset <http://createme.org/dataset/Example-Systematic-Survey-Site-Visit-Dataset> ;
     sosa:usedProcedure <http://linked.data.gov.au/def/tern-cv/ea1d6342-1901-4f88-8482-3111286ec157> .
 
 <https://linked.data.gov.au/dataset/bdr/orgs/DBCA> a prov:Agent,

diff --git a/abis_mapping/templates/survey_site_visit_data_v2/mapping.py b/abis_mapping/templates/survey_site_visit_data_v2/mapping.py
@@ -753,6 +753,9 @@ def add_site_visit_plan(
         # Add subject type
         graph.add((uri, a, rdflib.PROV.Plan))
 
+        # add link to dataset
+        graph.add((uri, rdflib.VOID.inDataset, dataset))
+
         # Add description
         row_protocol_description: str | None = row["protocolDescription"]
         if row_protocol_description: