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Swap tern:SampleCollection for tern:Collection in incidental v3 mapping
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@Lincoln-GR
Lincoln-GR committed Oct 24, 2024
1 parent 8715ba9 commit 394d2c1
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18 changes: 9 additions & 9 deletions ...ates/incidental_occurrence_data_v3/examples/margaret_river_flora/margaret_river_flora.ttl
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Original file line number Diff line number Diff line change
Expand Up @@ -17,57 +17,57 @@
tern:hasSimpleValue "Category 1 - The Department of Biodiversity and Conservation" ;
tern:hasValue <http://createme.org/value/sensitivityCategory/16> .

<http://createme.org/dataset/Example-Incidental-Occurrence-Dataset/OccurrenceCollection/basisOfRecord/HumanObservation> a tern:SampleCollection ;
<http://createme.org/dataset/Example-Incidental-Occurrence-Dataset/OccurrenceCollection/basisOfRecord/HumanObservation> a tern:Collection ;
void:inDataset <http://createme.org/dataset/Example-Incidental-Occurrence-Dataset> ;
sosa:hasMember <http://createme.org/sample/specimen/14> ;
schema:identifier "Occurrence Collection - Basis Of Record - HumanObservation" ;
tern:hasAttribute <http://createme.org/attribute/basisOfRecord/HumanObservation> .

<http://createme.org/dataset/Example-Incidental-Occurrence-Dataset/OccurrenceCollection/basisOfRecord/PreservedSpecimen> a tern:SampleCollection ;
<http://createme.org/dataset/Example-Incidental-Occurrence-Dataset/OccurrenceCollection/basisOfRecord/PreservedSpecimen> a tern:Collection ;
void:inDataset <http://createme.org/dataset/Example-Incidental-Occurrence-Dataset> ;
sosa:hasMember <http://createme.org/sample/specimen/13>,
<http://createme.org/sample/specimen/15> ;
schema:identifier "Occurrence Collection - Basis Of Record - PreservedSpecimen" ;
tern:hasAttribute <http://createme.org/attribute/basisOfRecord/PreservedSpecimen> .

<http://createme.org/dataset/Example-Incidental-Occurrence-Dataset/OccurrenceCollection/basisOfRecord/new-basis-of-record> a tern:SampleCollection ;
<http://createme.org/dataset/Example-Incidental-Occurrence-Dataset/OccurrenceCollection/basisOfRecord/new-basis-of-record> a tern:Collection ;
void:inDataset <http://createme.org/dataset/Example-Incidental-Occurrence-Dataset> ;
sosa:hasMember <http://createme.org/sample/specimen/16> ;
schema:identifier "Occurrence Collection - Basis Of Record - new basis of record" ;
tern:hasAttribute <http://createme.org/attribute/basisOfRecord/new-basis-of-record> .

<http://createme.org/dataset/Example-Incidental-Occurrence-Dataset/OccurrenceCollection/dataGeneralizations/Coordinates-generalised> a tern:SampleCollection ;
<http://createme.org/dataset/Example-Incidental-Occurrence-Dataset/OccurrenceCollection/dataGeneralizations/Coordinates-generalised> a tern:Collection ;
void:inDataset <http://createme.org/dataset/Example-Incidental-Occurrence-Dataset> ;
sosa:hasMember <http://createme.org/sample/field/16> ;
schema:identifier "Occurrence Collection - Data Generalizations - Coordinates generalised" ;
tern:hasAttribute <http://createme.org/attribute/dataGeneralizations/Coordinates-generalised> .

<http://createme.org/dataset/Example-Incidental-Occurrence-Dataset/OccurrenceCollection/dataGeneralizations/Coordinates-rounded-to-the-nearest-10-km-for-conservation-concern> a tern:SampleCollection ;
<http://createme.org/dataset/Example-Incidental-Occurrence-Dataset/OccurrenceCollection/dataGeneralizations/Coordinates-rounded-to-the-nearest-10-km-for-conservation-concern> a tern:Collection ;
void:inDataset <http://createme.org/dataset/Example-Incidental-Occurrence-Dataset> ;
sosa:hasMember <http://createme.org/sample/field/14>,
<http://createme.org/sample/field/15> ;
schema:identifier "Occurrence Collection - Data Generalizations - Coordinates rounded to the nearest 10 km for conservation concern" ;
tern:hasAttribute <http://createme.org/attribute/dataGeneralizations/Coordinates-rounded-to-the-nearest-10-km-for-conservation-concern> .

<http://createme.org/dataset/Example-Incidental-Occurrence-Dataset/OccurrenceCollection/habitat/Closed-forest-of-Melaleuca-lanceolata-White-grey-or-brown-sand-sandy-loam> a tern:SampleCollection ;
<http://createme.org/dataset/Example-Incidental-Occurrence-Dataset/OccurrenceCollection/habitat/Closed-forest-of-Melaleuca-lanceolata-White-grey-or-brown-sand-sandy-loam> a tern:Collection ;
void:inDataset <http://createme.org/dataset/Example-Incidental-Occurrence-Dataset> ;
sosa:hasMember <http://createme.org/sample/field/15> ;
schema:identifier "Occurrence Collection - Habitat - Closed forest of Melaleuca lanceolata. White, grey or brown sand, sandy loam." ;
tern:hasAttribute <http://createme.org/attribute/habitat/Closed-forest-of-Melaleuca-lanceolata-White-grey-or-brown-sand-sandy-loam> .

<http://createme.org/dataset/Example-Incidental-Occurrence-Dataset/OccurrenceCollection/habitat/new-habitat> a tern:SampleCollection ;
<http://createme.org/dataset/Example-Incidental-Occurrence-Dataset/OccurrenceCollection/habitat/new-habitat> a tern:Collection ;
void:inDataset <http://createme.org/dataset/Example-Incidental-Occurrence-Dataset> ;
sosa:hasMember <http://createme.org/sample/field/16> ;
schema:identifier "Occurrence Collection - Habitat - new habitat" ;
tern:hasAttribute <http://createme.org/attribute/habitat/new-habitat> .

<http://createme.org/dataset/Example-Incidental-Occurrence-Dataset/OccurrenceCollection/preparations/Wet-in-ethanol-or-some-other-preservative> a tern:SampleCollection ;
<http://createme.org/dataset/Example-Incidental-Occurrence-Dataset/OccurrenceCollection/preparations/Wet-in-ethanol-or-some-other-preservative> a tern:Collection ;
void:inDataset <http://createme.org/dataset/Example-Incidental-Occurrence-Dataset> ;
sosa:hasMember <http://createme.org/sample/specimen/15> ;
schema:identifier "Occurrence Collection - Preparations - Wet (in ethanol or some other preservative)" ;
tern:hasAttribute <http://createme.org/attribute/preparations/Wet-in-ethanol-or-some-other-preservative> .

<http://createme.org/dataset/Example-Incidental-Occurrence-Dataset/OccurrenceCollection/preparations/new-preparations> a tern:SampleCollection ;
<http://createme.org/dataset/Example-Incidental-Occurrence-Dataset/OccurrenceCollection/preparations/new-preparations> a tern:Collection ;
void:inDataset <http://createme.org/dataset/Example-Incidental-Occurrence-Dataset> ;
sosa:hasMember <http://createme.org/sample/specimen/16> ;
schema:identifier "Occurrence Collection - Preparations - new preparations" ;
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8 changes: 4 additions & 4 deletions abis_mapping/templates/incidental_occurrence_data_v3/mapping.py
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Original file line number Diff line number Diff line change
Expand Up @@ -1979,7 +1979,7 @@ def add_data_generalizations_sample_collection(
return

# Add type
graph.add((uri, a, utils.namespaces.TERN.SampleCollection))
graph.add((uri, a, utils.namespaces.TERN.Collection))
# Add identifier
if data_generalizations:
graph.add(
Expand Down Expand Up @@ -2296,7 +2296,7 @@ def add_habitat_sample_collection(
return

# Add type
graph.add((uri, a, utils.namespaces.TERN.SampleCollection))
graph.add((uri, a, utils.namespaces.TERN.Collection))
# Add identifier
if habitat:
graph.add((uri, rdflib.SDO.identifier, rdflib.Literal(f"Occurrence Collection - Habitat - {habitat}")))
Expand Down Expand Up @@ -2401,7 +2401,7 @@ def add_basis_sample_collection(
return

# Add type
graph.add((uri, a, utils.namespaces.TERN.SampleCollection))
graph.add((uri, a, utils.namespaces.TERN.Collection))
# Add identifier
if basis_of_record:
graph.add(
Expand Down Expand Up @@ -2628,7 +2628,7 @@ def add_preparations_sample_collection(
return

# Add type
graph.add((uri, a, utils.namespaces.TERN.SampleCollection))
graph.add((uri, a, utils.namespaces.TERN.Collection))
# Add identifier
if preparations:
graph.add(
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