Upgrade SimpleSDMLayers to v0.6.0 and DataFrames to v1.1.1

[gabrieldansereau]

Upgrading SimpleSDMLayers to v0.6.0 and DataFrames to v1.1.1.

TO-DO

• Replace worldclim by SimpleSDMPredictor(WorldClim, BioClim, ...)
• Fix DataFrame(matrix, :auto) calls

[gabrieldansereau]

The upgrade is technically done, so I'll merge this.

However, I found the bug described in PoisotLab/SimpleSDMLayers.jl#99 while upgrading, which has actually been around for a while and breaks a few things here. Here's the details for each script. I'll fix them once the issue is closed.

• 00c_preparation_landcover.jl: ❌ cannot combine the env layers as their dimensions are not the same, which blocks exporting distributions_env_full.csv. The file is still valid since the export hasn't been done in a while
• 01_distributions.jl: ✅ current script is broken, but presence-absence only uses the dimensions from a WorldClim layer, so it can be worked around easily
• 02_training_*.R: ✔️ should be fine as distributions_env_full.csv has not been updated :
• 03_prediction: ✔️ no change
• 04_analysis: ✔️ no change
• 05_subareas:
  • NE-SW: ✔️ same dimensions
  • 3 extents: ❌ dimensions are different, which means the results will change a bit once the bug is fixed. Shouldn't change much though, as its only a difference of one row or column
• 06_moving-window: ✔️ bah
• 07_difference: ✔️ no change
• 08_rarespecies: ✔️ same dimensions