Skip to content

v1.3

Compare
Choose a tag to compare
@pattonw pattonw released this 18 Apr 17:36

Change log:
Features:

  • Added GraphSource with tests and added to docs
  • Added IterateLocations node with tests and added to docs
  • Added write_if helper function to Snapshot that can be overwritten for data dependent snapshot saving
  • Added Jax Train/Predict nodes
  • RandomLocation can save the chosen location to a nonspatial array.
  • support the spawn start method for gunpowder subprocesses
  • ZarrSource and ZarrWrite now match zarr.open convenience function
  • HDF5LikeSource and HDF5LikeWrite depricated
  • ElasticAugment depricated
  • DeformAugment replaces ElasticAugment and works in world units.

Dependencies:

  • Switched to funlib.geometry for Roi and Coordinate to make use with daisy and other similar libraries simpler
  • Update daisy version in dependencies

Bug Fixes:

  • avoid hanging teardown in generic predict if worker process dies
  • fix nonspatial array handling during training
  • up/downsampling arrays with channel dimensions works now
  • removed depricated numpy dtypes (np.int, np.bool, ...)