Saving code that was wrongly merged to master instead of dev #56
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* add illumina docker test (#44) * Update github actions for testing profiles (#46) * add illumina docker test * add other workflows as template * update sreads singularity test action * update lreads test actions * add hybrid test actions * remove unnecessary comments * 30 change to unicycler v050 (#45) * update version information * remove old spades binary for new unicycler version * update dockerfile to use new conda recipe * add testing profiles * working conda installation * update multiqc report * fixed docker image * increase asked cpus * Update nextflow_schema.json * decrease expected genome size * fix long reads assemblers installation * split long reads samplesheets * flye require 10.GB RAM * update workflows * easimon do not work in macos * update java * small update for tests * canu needs 4 cpus * update genome size value * split samplesheet in ont & pacbio * split proflies in ont & pacbio (hybrid) * delete unused files * new docker image has new python version * docker image fixed * skip flye tht requires much memory * fixed pacbio execution * revert to ubuntu * canu also is too much for git actions * remove unnecessary files * modify pilon polish script to run on number of desired rounds * fix output namings * fix outputs * pacbio profile working * update pilon info in docs * update changelog * upload yml with version of installed tools * update docs * use quast to save resulting assemblies
…missing-in-busco
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A PR #48 in the past has been wrongly merged to master instead of dev.
Master has now been restored, and this branch which has the code from the merged master, is now being properly merge to dev.