add illumina docker test

.github/workflows/test_pr_illumina_docker.yml

@@ -0,0 +1,43 @@
+# This workflow set's up an automated execution for testing the code when a new PR is created
+# It uses the head branch name to trigger the execution of the new module or subworkflow ...
+#
+# For example, if I just created a module for roary, I should name the new branch as roary
+# then, this workflow will run: nextflow run fmalmeida/bacannot-compare --roary (the head branch name) [blah blah blah]
+
+name: Testing illumina / docker from PR
+on:
+  pull_request:
+    branches: [ master, dev ]
+    types: [ opened, synchronize, reopened ]
+
+jobs:
+  run_nextflow:
+    name: Run pipeline for the upcoming PR
+    runs-on: ubuntu-latest
+
+    steps:
+
+      - name: Check out pipeline code
+        uses: actions/checkout@v2
+
+      - name: Install Nextflow
+        env:
+          CAPSULE_LOG: none
+        run: |
+          wget -qO- get.nextflow.io | bash
+          sudo mv nextflow /usr/local/bin/
+
+      - name: Clean environment
+        run: |
+          sudo rm -rf /usr/local/lib/android # will release about 10 GB if you don't need Android
+          sudo rm -rf /usr/share/dotnet # will release about 20GB if you don't need .NET
+
+      - name: Run tests for illumina
+        run: |
+          nextflow run main.nf -profile docker,test,sreads
+          rm -r work .nextflow*
+
+      - name: View results
+        run: |
+          sudo apt-get install -y tree
+          tree sreads_test