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customizing hybrid_strategy check-up #37

Merged
merged 17 commits into from
Sep 3, 2022
Merged

customizing hybrid_strategy check-up #37

merged 17 commits into from
Sep 3, 2022

Commits on Jul 25, 2022

  1. customizing hybrid_strategy check-up

    @fmalmeida
    fmalmeida committed Jul 25, 2022
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Commits on Jul 26, 2022

  1. Create .gitpod.yml

    @fmalmeida
    fmalmeida committed Jul 26, 2022
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Commits on Jul 27, 2022

  1. allocate more resources for quast and fix indentation

    @fmalmeida
    fmalmeida committed Jul 27, 2022
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Commits on Jul 28, 2022

  1. Update haslr_hybrid.nf 

    haslr sometimes randomly quits ... make it retry
    @fmalmeida
    fmalmeida committed Jul 28, 2022
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Commits on Aug 1, 2022

  1. pilon module make sure to have fresh outdir

    @fmalmeida
    fmalmeida committed Aug 1, 2022
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Commits on Aug 17, 2022

  1. adding changes for new version

    @fmalmeida
    fmalmeida committed Aug 17, 2022
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Commits on Aug 18, 2022

  1. fixing haslr retry definition

    @fmalmeida
    fmalmeida committed Aug 18, 2022
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  2. Update nextflow.config

    @fmalmeida
    fmalmeida committed Aug 18, 2022
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  3. Update base.config

    @fmalmeida
    fmalmeida committed Aug 18, 2022
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  4. Update base.config

    @fmalmeida
    fmalmeida committed Aug 18, 2022
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Commits on Aug 20, 2022

  1. file copy also for cloud envs

    @fmalmeida
    fmalmeida committed Aug 20, 2022
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  2. copy statement does not work in cloud envs

    @fmalmeida
    fmalmeida committed Aug 20, 2022
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  3. fixed error

    @fmalmeida
    fmalmeida committed Aug 20, 2022
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Commits on Aug 28, 2022

  1. add option to not pilon polish raw assemblies

    @fmalmeida
    fmalmeida authored Aug 28, 2022
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  2. fix new params usage

    @fmalmeida
    fmalmeida authored Aug 28, 2022
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  3. update manual with new parameter

    @fmalmeida
    fmalmeida authored Aug 28, 2022
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Commits on Sep 3, 2022

  1. Update base.config

    @fmalmeida
    fmalmeida authored Sep 3, 2022
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