Deployed 87dd13c to latest with MkDocs 1.6.1 and mike 2.1.2

latest/404.html

@@ -14,15 +14,15 @@
 
 
       <link rel="icon" href="/fjclark/red/latest/assets/images/favicon.png">
-      <meta name="generator" content="mkdocs-1.6.1, mkdocs-material-9.5.36">
+      <meta name="generator" content="mkdocs-1.6.1, mkdocs-material-9.5.39">
 
 
 
         <title>red</title>
 
 
 
-      <link rel="stylesheet" href="/fjclark/red/latest/assets/stylesheets/main.06209087.min.css">
+      <link rel="stylesheet" href="/fjclark/red/latest/assets/stylesheets/main.8c3ca2c6.min.css">
 
 
         <link rel="stylesheet" href="/fjclark/red/latest/assets/stylesheets/palette.06af60db.min.css">
@@ -865,7 +865,7 @@ <h1>404 - Not found</h1>
     <script id="__config" type="application/json">{"base": "/fjclark/red/latest", "features": ["announce.dismiss", "content.code.annotate", "content.code.copy", "content.tooltips", "navigation.footer", "navigation.indexes", "navigation.sections", "navigation.tabs", "navigation.tabs.sticky", "navigation.top", "search.highlight", "search.suggest", "toc.follow"], "search": "/fjclark/red/latest/assets/javascripts/workers/search.6ce7567c.min.js", "translations": {"clipboard.copied": "Copied to clipboard", "clipboard.copy": "Copy to clipboard", "search.result.more.one": "1 more on this page", "search.result.more.other": "# more on this page", "search.result.none": "No matching documents", "search.result.one": "1 matching document", "search.result.other": "# matching documents", "search.result.placeholder": "Type to start searching", "search.result.term.missing": "Missing", "select.version": "Select version"}, "version": {"provider": "mike"}}</script>
 
 
-      <script src="/fjclark/red/latest/assets/javascripts/bundle.56dfad97.min.js"></script>
+      <script src="/fjclark/red/latest/assets/javascripts/bundle.525ec568.min.js"></script>
 
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latest/changelog/index.html

@@ -18,15 +18,15 @@
 
 
       <link rel="icon" href="../assets/images/favicon.png">
-      <meta name="generator" content="mkdocs-1.6.1, mkdocs-material-9.5.36">
+      <meta name="generator" content="mkdocs-1.6.1, mkdocs-material-9.5.39">
 
 
 
         <title>Changelog - red</title>
 
 
 
-      <link rel="stylesheet" href="../assets/stylesheets/main.06209087.min.css">
+      <link rel="stylesheet" href="../assets/stylesheets/main.8c3ca2c6.min.css">
 
 
         <link rel="stylesheet" href="../assets/stylesheets/palette.06af60db.min.css">
@@ -830,6 +830,30 @@
     </label>
     <ul class="md-nav__list" data-md-component="toc" data-md-scrollfix>
 
+        <li class="md-nav__item">
+  <a href="#011-2024-09-29" class="md-nav__link">
+    <span class="md-ellipsis">
+      [0.1.1] - 2024-09-29
+    </span>
+  </a>
+
+    <nav class="md-nav" aria-label="[0.1.1] - 2024-09-29">
+      <ul class="md-nav__list">
+
+          <li class="md-nav__item">
+  <a href="#fixed" class="md-nav__link">
+    <span class="md-ellipsis">
+      Fixed
+    </span>
+  </a>
+
+</li>
+
+      </ul>
+    </nav>
+
+</li>
+
         <li class="md-nav__item">
   <a href="#010-2024-09-23" class="md-nav__link">
     <span class="md-ellipsis">
@@ -873,6 +897,30 @@
     </label>
     <ul class="md-nav__list" data-md-component="toc" data-md-scrollfix>
 
+        <li class="md-nav__item">
+  <a href="#011-2024-09-29" class="md-nav__link">
+    <span class="md-ellipsis">
+      [0.1.1] - 2024-09-29
+    </span>
+  </a>
+
+    <nav class="md-nav" aria-label="[0.1.1] - 2024-09-29">
+      <ul class="md-nav__list">
+
+          <li class="md-nav__item">
+  <a href="#fixed" class="md-nav__link">
+    <span class="md-ellipsis">
+      Fixed
+    </span>
+  </a>
+
+</li>
+
+      </ul>
+    </nav>
+
+</li>
+
         <li class="md-nav__item">
   <a href="#010-2024-09-23" class="md-nav__link">
     <span class="md-ellipsis">
@@ -901,6 +949,11 @@
 
 
 <h1 id="changelog">Changelog<a class="headerlink" href="#changelog" title="Permanent link">#</a></h1>
+<h2 id="011-2024-09-29">[0.1.1] - 2024-09-29<a class="headerlink" href="#011-2024-09-29" title="Permanent link">#</a></h2>
+<h3 id="fixed">Fixed<a class="headerlink" href="#fixed" title="Permanent link">#</a></h3>
+<ul>
+<li>Ensure that equilibration detection functions return integer indices when times are not provided.</li>
+</ul>
 <h2 id="010-2024-09-23">[0.1.0] - 2024-09-23<a class="headerlink" href="#010-2024-09-23" title="Permanent link">#</a></h2>
 <p>Initial release.</p>
 
@@ -986,7 +1039,7 @@ <h2 id="010-2024-09-23">[0.1.0] - 2024-09-23<a class="headerlink" href="#010-202
     <script id="__config" type="application/json">{"base": "..", "features": ["announce.dismiss", "content.code.annotate", "content.code.copy", "content.tooltips", "navigation.footer", "navigation.indexes", "navigation.sections", "navigation.tabs", "navigation.tabs.sticky", "navigation.top", "search.highlight", "search.suggest", "toc.follow"], "search": "../assets/javascripts/workers/search.6ce7567c.min.js", "translations": {"clipboard.copied": "Copied to clipboard", "clipboard.copy": "Copy to clipboard", "search.result.more.one": "1 more on this page", "search.result.more.other": "# more on this page", "search.result.none": "No matching documents", "search.result.one": "1 matching document", "search.result.other": "# matching documents", "search.result.placeholder": "Type to start searching", "search.result.term.missing": "Missing", "select.version": "Select version"}, "version": {"provider": "mike"}}</script>
 
 
-      <script src="../assets/javascripts/bundle.56dfad97.min.js"></script>
+      <script src="../assets/javascripts/bundle.525ec568.min.js"></script>
 
         <script src="../javascripts/mathjax.js"></script>
 

latest/development/index.html

@@ -20,15 +20,15 @@
 
 
       <link rel="icon" href="../assets/images/favicon.png">
-      <meta name="generator" content="mkdocs-1.6.1, mkdocs-material-9.5.36">
+      <meta name="generator" content="mkdocs-1.6.1, mkdocs-material-9.5.39">
 
 
 
         <title>Development - red</title>
 
 
 
-      <link rel="stylesheet" href="../assets/stylesheets/main.06209087.min.css">
+      <link rel="stylesheet" href="../assets/stylesheets/main.8c3ca2c6.min.css">
 
 
         <link rel="stylesheet" href="../assets/stylesheets/palette.06af60db.min.css">
@@ -1071,7 +1071,7 @@ <h3 id="pypi">PyPI<a class="headerlink" href="#pypi" title="Permanent link">#</a
     <script id="__config" type="application/json">{"base": "..", "features": ["announce.dismiss", "content.code.annotate", "content.code.copy", "content.tooltips", "navigation.footer", "navigation.indexes", "navigation.sections", "navigation.tabs", "navigation.tabs.sticky", "navigation.top", "search.highlight", "search.suggest", "toc.follow"], "search": "../assets/javascripts/workers/search.6ce7567c.min.js", "translations": {"clipboard.copied": "Copied to clipboard", "clipboard.copy": "Copy to clipboard", "search.result.more.one": "1 more on this page", "search.result.more.other": "# more on this page", "search.result.none": "No matching documents", "search.result.one": "1 matching document", "search.result.other": "# matching documents", "search.result.placeholder": "Type to start searching", "search.result.term.missing": "Missing", "select.version": "Select version"}, "version": {"provider": "mike"}}</script>
 
 
-      <script src="../assets/javascripts/bundle.56dfad97.min.js"></script>
+      <script src="../assets/javascripts/bundle.525ec568.min.js"></script>
 
         <script src="../javascripts/mathjax.js"></script>
 

latest/examples/index.html

@@ -20,15 +20,15 @@
 
 
       <link rel="icon" href="../assets/images/favicon.png">
-      <meta name="generator" content="mkdocs-1.6.1, mkdocs-material-9.5.36">
+      <meta name="generator" content="mkdocs-1.6.1, mkdocs-material-9.5.39">
 
 
 
         <title>Examples - red</title>
 
 
 
-      <link rel="stylesheet" href="../assets/stylesheets/main.06209087.min.css">
+      <link rel="stylesheet" href="../assets/stylesheets/main.8c3ca2c6.min.css">
 
 
         <link rel="stylesheet" href="../assets/stylesheets/palette.06af60db.min.css">
@@ -1177,7 +1177,7 @@ <h2 id="estimating-uncertainty">Estimating Uncertainty<a class="headerlink" href
     <script id="__config" type="application/json">{"base": "..", "features": ["announce.dismiss", "content.code.annotate", "content.code.copy", "content.tooltips", "navigation.footer", "navigation.indexes", "navigation.sections", "navigation.tabs", "navigation.tabs.sticky", "navigation.top", "search.highlight", "search.suggest", "toc.follow"], "search": "../assets/javascripts/workers/search.6ce7567c.min.js", "translations": {"clipboard.copied": "Copied to clipboard", "clipboard.copy": "Copy to clipboard", "search.result.more.one": "1 more on this page", "search.result.more.other": "# more on this page", "search.result.none": "No matching documents", "search.result.one": "1 matching document", "search.result.other": "# matching documents", "search.result.placeholder": "Type to start searching", "search.result.term.missing": "Missing", "select.version": "Select version"}, "version": {"provider": "mike"}}</script>
 
 
-      <script src="../assets/javascripts/bundle.56dfad97.min.js"></script>
+      <script src="../assets/javascripts/bundle.525ec568.min.js"></script>
 
         <script src="../javascripts/mathjax.js"></script>
 

latest/index.html

@@ -18,15 +18,15 @@
 
 
       <link rel="icon" href="assets/images/favicon.png">
-      <meta name="generator" content="mkdocs-1.6.1, mkdocs-material-9.5.36">
+      <meta name="generator" content="mkdocs-1.6.1, mkdocs-material-9.5.39">
 
 
 
         <title>Overview - red</title>
 
 
 
-      <link rel="stylesheet" href="assets/stylesheets/main.06209087.min.css">
+      <link rel="stylesheet" href="assets/stylesheets/main.8c3ca2c6.min.css">
 
 
         <link rel="stylesheet" href="assets/stylesheets/palette.06af60db.min.css">
@@ -943,8 +943,8 @@ <h2 align="center">Robust Equilibration Detection</h2>
 </ul>
 <p>For both, the equilibration point can be determined either according to the minimum of the squared standard error (the default), or the maximum effective sample size, by specifying <code>method="min_sse"</code> or <code>method="max_ess"</code>.</p>
 <h3 id="installation">Installation<a class="headerlink" href="#installation" title="Permanent link">#</a></h3>
-<p>The easiest way to install <code>red</code> is using <code>conda</code> (or <code>mamba</code>):</p>
-<div class="language-bash highlight"><pre><span></span><code><span id="__span-0-1"><a id="__codelineno-0-1" name="__codelineno-0-1" href="#__codelineno-0-1"></a>conda<span class="w"> </span>install<span class="w"> </span>-c<span class="w"> </span>conda-forge<span class="w"> </span>red
+<p>The easiest way to install <code>red</code> is using <code>conda</code> (or <code>mamba</code>) (note that the conda-forge/ PyPI name is <code>red-molsim</code> to avoid conflicts):</p>
+<div class="language-bash highlight"><pre><span></span><code><span id="__span-0-1"><a id="__codelineno-0-1" name="__codelineno-0-1" href="#__codelineno-0-1"></a>conda<span class="w"> </span>install<span class="w"> </span>-c<span class="w"> </span>conda-forge<span class="w"> </span>red-molsim
 </span></code></pre></div>
 <p>Alternatively, you can install <code>red</code> from the Python Package Index (PyPI) using <code>pip</code>:</p>
 <div class="language-bash highlight"><pre><span></span><code><span id="__span-1-1"><a id="__codelineno-1-1" name="__codelineno-1-1" href="#__codelineno-1-1"></a>pip<span class="w"> </span>install<span class="w"> </span>red-molsim
@@ -1075,7 +1075,7 @@ <h3 id="acknowledgements">Acknowledgements<a class="headerlink" href="#acknowled
     <script id="__config" type="application/json">{"base": ".", "features": ["announce.dismiss", "content.code.annotate", "content.code.copy", "content.tooltips", "navigation.footer", "navigation.indexes", "navigation.sections", "navigation.tabs", "navigation.tabs.sticky", "navigation.top", "search.highlight", "search.suggest", "toc.follow"], "search": "assets/javascripts/workers/search.6ce7567c.min.js", "translations": {"clipboard.copied": "Copied to clipboard", "clipboard.copy": "Copy to clipboard", "search.result.more.one": "1 more on this page", "search.result.more.other": "# more on this page", "search.result.none": "No matching documents", "search.result.one": "1 matching document", "search.result.other": "# matching documents", "search.result.placeholder": "Type to start searching", "search.result.term.missing": "Missing", "select.version": "Select version"}, "version": {"provider": "mike"}}</script>
 
 
-      <script src="assets/javascripts/bundle.56dfad97.min.js"></script>
+      <script src="assets/javascripts/bundle.525ec568.min.js"></script>
 
         <script src="javascripts/mathjax.js"></script>
 

latest/reference/SUMMARY/index.html

@@ -16,15 +16,15 @@
 
 
       <link rel="icon" href="../../assets/images/favicon.png">
-      <meta name="generator" content="mkdocs-1.6.1, mkdocs-material-9.5.36">
+      <meta name="generator" content="mkdocs-1.6.1, mkdocs-material-9.5.39">
 
 
 
         <title>SUMMARY - red</title>
 
 
 
-      <link rel="stylesheet" href="../../assets/stylesheets/main.06209087.min.css">
+      <link rel="stylesheet" href="../../assets/stylesheets/main.8c3ca2c6.min.css">
 
 
         <link rel="stylesheet" href="../../assets/stylesheets/palette.06af60db.min.css">
@@ -895,7 +895,7 @@ <h1>SUMMARY</h1>
     <script id="__config" type="application/json">{"base": "../..", "features": ["announce.dismiss", "content.code.annotate", "content.code.copy", "content.tooltips", "navigation.footer", "navigation.indexes", "navigation.sections", "navigation.tabs", "navigation.tabs.sticky", "navigation.top", "search.highlight", "search.suggest", "toc.follow"], "search": "../../assets/javascripts/workers/search.6ce7567c.min.js", "translations": {"clipboard.copied": "Copied to clipboard", "clipboard.copy": "Copy to clipboard", "search.result.more.one": "1 more on this page", "search.result.more.other": "# more on this page", "search.result.none": "No matching documents", "search.result.one": "1 matching document", "search.result.other": "# matching documents", "search.result.placeholder": "Type to start searching", "search.result.term.missing": "Missing", "select.version": "Select version"}, "version": {"provider": "mike"}}</script>
 
 
-      <script src="../../assets/javascripts/bundle.56dfad97.min.js"></script>
+      <script src="../../assets/javascripts/bundle.525ec568.min.js"></script>
 
         <script src="../../javascripts/mathjax.js"></script>
 

latest/reference/confidence_intervals/index.html

@@ -20,15 +20,15 @@
 
 
       <link rel="icon" href="../../assets/images/favicon.png">
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         <title>confidence_intervals - red</title>
 
 
 
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         <link rel="stylesheet" href="../../assets/stylesheets/palette.06af60db.min.css">
@@ -1282,7 +1282,7 @@ <h2 id="red.confidence_intervals.get_conf_int_init_seq" class="doc doc-heading">
     <script id="__config" type="application/json">{"base": "../..", "features": ["announce.dismiss", "content.code.annotate", "content.code.copy", "content.tooltips", "navigation.footer", "navigation.indexes", "navigation.sections", "navigation.tabs", "navigation.tabs.sticky", "navigation.top", "search.highlight", "search.suggest", "toc.follow"], "search": "../../assets/javascripts/workers/search.6ce7567c.min.js", "translations": {"clipboard.copied": "Copied to clipboard", "clipboard.copy": "Copy to clipboard", "search.result.more.one": "1 more on this page", "search.result.more.other": "# more on this page", "search.result.none": "No matching documents", "search.result.one": "1 matching document", "search.result.other": "# matching documents", "search.result.placeholder": "Type to start searching", "search.result.term.missing": "Missing", "select.version": "Select version"}, "version": {"provider": "mike"}}</script>
 
 
-      <script src="../../assets/javascripts/bundle.56dfad97.min.js"></script>
+      <script src="../../assets/javascripts/bundle.525ec568.min.js"></script>
 
         <script src="../../javascripts/mathjax.js"></script>