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malaria_variant_calling

INTEGRATING GOOGLE SHEETS API:

To install gspread client, we'll need an updated version of setuptools pip install --upgrade setuptools

Note: To install 'pip' if required: curl https://bootstrap.pypa.io/get-pip.py -o get-pip.py python get-pip.py

#Writing the results from summary metrics to google sheet echo "Please Note: additional python packages may be installed to upload the results from the run to gsheet. Please don't exit while the enviornment intiates." #intiating the python env required #using python pip pip install -r mal_var_call_requirements.txt

#using Anaconda
conda create --name mal_var_call --file mal_var_call_requirements.txt
source activate mal_var_cal

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