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add detilas about execution and fix readme references
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thomas-saigre committed Oct 9, 2024
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The dataset is available in `data/`.

The meshes construction are available in https://github.com/feelpp/mesh.eye. <<Chabannes24>>
The meshes construction are available in https://github.com/feelpp/mesh.eye. <<mesh>>
Insert the meshes in the directory `data/mesh`.



=== Run the high fidelity model

The high fidelity model is run using the Feel++ <<Prudhomme24>> heat tooblox <<fpp24>>:
The high fidelity model is run using the Feel++ <<feelpp>> heat tooblox <<heat>>:

[source, bash]
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=== Generate the reduced basis metamodel, and run de stochastic sensitivity analysis

To reproduce the results of the reduced basis model presented in Section 3.3 of the publication, and the results of the stochastic sensitivity analysis presented in Section 4.2, refer to the code integrated to the Feel++ repository <<feelpp>>, in the directory https://github.com/feelpp/feelpp/tree/develop/mor/examples/eye2brain[`feelpp/mor/examples/eye2brain`].


== References

* [[Chabannes24]] Chabannes, V., Prud'homme, C., Saigre, T., Lorenzo, S., Szopos, M., & Trophime, C. (2024). A 3D geometrical model and meshing procedures for the human eyeball (Version 1.0.0) [Computer software]. https://github.com/feelpp/mesh.eye image:https://zenodo.org/badge/DOI/10.5281/zenodo.13886143.svg[DOI,link=https://github.com/feelpp/mesh.eye]
* [[Prudhomme24]] Christophe Prud'homme, Vincent Chabannes, Thomas Saigre, Christophe Trophime, Luca Berti, Abdoulaye Samaké, Céline Van Landeghem, et al. « Feelpp/feelpp: Feel++ Release V111 Preview.10 ». Zenodo, 15 juillet 2024. https://doi.org/10.5281/zenodo.12742155.
* [[fpp24]] "Heat Transfer Toolbox Application Manual." Feel++ Documentation, 2024, https://docs.feelpp.org/toolboxes/latest/heat/index.html.
* [[mesh]] Chabannes, V., Prud'homme, C., Saigre, T., Lorenzo, S., Szopos, M., & Trophime, C. (2024). A 3D geometrical model and meshing procedures for the human eyeball (Version 1.0.0) [Computer software]. https://github.com/feelpp/mesh.eye image:https://zenodo.org/badge/DOI/10.5281/zenodo.13886143.svg[DOI,link=https://github.com/feelpp/mesh.eye]
* [[feelpp]] Christophe Prud'homme, Vincent Chabannes, Thomas Saigre, Christophe Trophime, Luca Berti, Abdoulaye Samaké, Céline Van Landeghem, et al. « Feelpp/feelpp: Feel++ Release V111 Preview.10 ». Zenodo, 15 juillet 2024. . image:https://zenodo.org/badge/DOI/10.5281/zenodo.12742155.svg[DOI,link=https://doi.org/10.5281/zenodo.12742155]
* [[heat]] "Heat Transfer Toolbox Application Manual." Feel++ Documentation, 2024, https://docs.feelpp.org/toolboxes/latest/heat/index.html.

== Acknowledgements

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