[feat] negative detector radius captures but does not save photons #440
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| name: Build+Upload MCX and Octave/MATLAB mex | |
| on: | |
| push: | |
| branches: | |
| - master | |
| tags: | |
| - '*' | |
| pull_request: | |
| branches: | |
| - master | |
| jobs: | |
| build_all: | |
| name: Build All | |
| strategy: | |
| matrix: | |
| os: [ubuntu-20.04, macos-13, windows-2019] | |
| runs-on: ${{ matrix.os }} | |
| defaults: | |
| run: | |
| shell: bash | |
| steps: | |
| - name: Checkout repo | |
| uses: actions/checkout@v3 | |
| with: | |
| submodules: 'recursive' | |
| - name: Install dependencies (Linux only) | |
| if: ${{ runner.os == 'Linux' }} | |
| run: | | |
| sudo apt-get update && sudo apt-get install -y liboctave-dev lazarus libxmu-dev gcc-7 g++-7 upx-ucl | |
| sudo update-alternatives --install /usr/bin/gcc gcc /usr/bin/gcc-7 7 | |
| sudo update-alternatives --install /usr/bin/g++ g++ /usr/bin/g++-7 7 | |
| - name: Install dependencies (MacOS only) | |
| if: ${{ runner.os == 'macOS' }} | |
| run: | | |
| brew install libomp | |
| curl -o Xcode10.app.tar.gz --insecure https://mcx.space/dev/ci/Xcode10.app.tar.gz | |
| tar zxf Xcode10.app.tar.gz | |
| rm -rf Xcode10.app.tar.gz | |
| sudo xcode-select --print-path | |
| sudo xcode-select -s $PWD/Xcode.app/Contents/Developer/ | |
| echo "$PWD/Xcode.app/Contents/Developer/usr/bin" >> $GITHUB_PATH | |
| echo "$PWD/Xcode.app/Contents/Developer/Toolchains/XcodeDefault.xctoolchain/usr/bin/" >> $GITHUB_PATH | |
| echo "SDKROOT=$PWD/Xcode.app/Contents/Developer/Platforms/MacOSX.platform/Developer/SDKs/MacOSX.sdk" >> $GITHUB_ENV | |
| #conda config --add channels conda-forge | |
| #conda config --set channel_priority strict | |
| #conda install octave | |
| #curl -L -o Octave-9.2-Intel.dmg --insecure https://github.com/octave-app/octave-app/releases/download/v9.2/Octave-9.2-Intel.dmg | |
| #xattr -c Octave-*.dmg | |
| #sudo hdiutil attach Octave-9.2-Intel.dmg | |
| #sudo cp -a /Volumes/Octave\ 9.2/Octave-9.2.app /Applications | |
| #echo "/Applications/Octave-9.2.app/Contents/Resources/usr/Cellar/[email protected]/9.2.0/bin" >> $GITHUB_PATH | |
| brew link --force libomp | |
| brew install --cask lazarus | |
| echo "/Applications/Lazarus/" >> $GITHUB_PATH | |
| - name: Install dependencies (Windows only) | |
| if: ${{ runner.os == 'Windows' }} | |
| run: | | |
| ## curl --retry 3 -kL http://cdimage.debian.org/mirror/gnu.org/gnu/octave/windows/octave-5.2.0_1-w64-64.7z --output octave_5.2.7z | |
| ## 7z x octave_5.2.7z -ooctave -y | |
| ## rm -rf octave_5.2.7z | |
| #choco install octave.portable --version=5.2.0 | |
| choco install lazarus --version=2.2.6 | |
| choco install mingw --version=8.1.0 | |
| curl --retry 3 -kL https://github.com/upx/upx/releases/download/v4.0.2/upx-4.0.2-win64.zip --output upx.zip | |
| 7z x upx.zip -oupx -y | |
| ## echo "$PWD/octave/octave-5.2.0-w64-64/mingw64/bin" >> $GITHUB_PATH | |
| echo 'C:\lazarus' >> $GITHUB_PATH | |
| echo 'C:\ProgramData\Chocolatey\lib\mingw\tools\install\mingw64\bin\' >> $GITHUB_PATH | |
| echo 'C:\Program Files (x86)\Microsoft Visual Studio 14.0\VC\bin\' >> $GITHUB_PATH | |
| echo 'MW_MINGW64_LOC=/c/ProgramData/Chocolatey/lib/mingw/tools/install/mingw64/' >> $GITHUB_ENV | |
| - name: Install CUDA (Linux only) | |
| if: ${{ runner.os == 'Linux' }} | |
| run: | | |
| cd /tmp && wget -q https://developer.nvidia.com/compute/cuda/9.2/Prod2/local_installers/cuda_9.2.148_396.37_linux | |
| sudo sh /tmp/cuda_9.2.148_396.37_linux --silent --toolkit --override | |
| rm -rf /tmp/cuda_9.2.148_396.37_linux | |
| export PATH=/usr/local/cuda/bin:$PATH | |
| ls /usr/local/cuda/bin | |
| echo "/usr/local/cuda/bin" >> $GITHUB_PATH | |
| nvcc --version | |
| - name: Install CUDA (MacOS only) | |
| if: ${{ runner.os == 'macOS' }} | |
| run: | | |
| curl -o cuda.zip --insecure https://mcx.space/dev/ci/cuda-10-2-0.zip | |
| unzip cuda.zip | |
| rm -rf cuda.zip | |
| sudo mv cuda/ /usr/local/ | |
| sudo chmod +x /usr/local/cuda/bin/* | |
| sudo chmod +x /usr/local/cuda/nvvm/bin/* | |
| echo "/usr/local/cuda/bin" >> $GITHUB_PATH | |
| echo "CUDA_PATH=/usr/local/cuda/bin" >> $GITHUB_ENV | |
| echo "CUDA_TOOLKIT_ROOT_DIR=/usr/local/cuda/" >> $GITHUB_ENV | |
| ln -s /usr/local/opt/libomp/include/*.h /usr/local/cuda/include | |
| mkdir -p ~/bin | |
| - name: Install CUDA (Windows only) | |
| if: ${{ runner.os == 'Windows' }} | |
| uses: Jimver/[email protected] | |
| id: cuda-toolkit | |
| with: | |
| cuda: '9.2.148' | |
| method: 'network' | |
| sub-packages: '["nvcc"]' | |
| - name: Link libgomp.a (MacOS only) | |
| if: ${{ runner.os == 'macOS' }} | |
| run: | | |
| sudo ln -s /usr/local/lib/gcc/10/libgomp.a /usr/local/lib/libgomp.a | |
| - name: Set up MATLAB | |
| uses: matlab-actions/setup-matlab@v1 | |
| with: | |
| release: R2022a | |
| - name: Update RCS keywords | |
| run: | | |
| printf '\n[filter "rcs-keywords"]\n\tclean = .git_filters/rcs-keywords.clean\n\tsmudge = .git_filters/rcs-keywords.smudge %f\n' >> .git/config | |
| rm -rf src/*.c | |
| git checkout src/*.c | |
| - name: Build mcxlab for Octave | |
| if: ${{ runner.os == 'Linux' }} | |
| run: | | |
| cd src | |
| which gcc | |
| gcc -v | |
| mkoctfile -p ALL_CXXFLAGS | |
| mkoctfile -p INCLUDEDIR | |
| mkoctfile -p INCFLAGS | |
| if [[ "$RUNNER_OS" == "Linux" ]]; then | |
| make oct BACKEND=cudastatic | |
| ldd ../mcxlab/mcx.mex | |
| elif [[ "$RUNNER_OS" == "macOS" ]]; then | |
| make oct CC=gcc-10 CXX=g++-10 USEROCTOPT="CXXFLAGS='-pipe -Os -arch x86_64' DL_LD=g++-10 DL_LDFLAGS='-fopenmp -static-libgcc -static-libstdc++'" | |
| otool -L ../mcxlab/mcx.mex | |
| else | |
| ln -s "C:\Program Files\NVIDIA GPU Computing Toolkit\CUDA\v9.2" cuda | |
| make oct INCLUDEDIRS="-I./cuda/include" CUDA_PATH="./cuda" XTRA_CFLAGS='-openmp' XTRA_CXXFLAGS='-openmp' INCLUDEDIR=' ' | |
| objdump -p ../mcxlab/mcx.mex | grep "DLL Name:" | |
| fi | |
| octave-cli --eval "fprintf(1,['OCTAVE_ARCH=' regexprep(computer('arch'), 'darwin[0-9.]+-', 'darwin-')])" | |
| octave-cli --eval "fprintf(1,['OCTAVE_ARCH=' regexprep(computer('arch'), 'darwin[0-9.]+-', 'darwin-')])" >> $GITHUB_ENV | |
| - name: Build mcxlab for MATLAB | |
| if: ${{ runner.os != 'macOS' }} | |
| run: | | |
| cd src | |
| if [[ "$RUNNER_OS" == "Windows" ]]; then | |
| make mex | |
| objdump -p ../mcxlab/mcx.mexw* | grep "DLL Name:" | |
| elif [[ "$RUNNER_OS" == "macOS" ]]; then | |
| which mex | |
| make mex CC=gcc-10 CXX=g++-10 MEXLINKOPT="-static-libstdc++ -static-libgcc -fopenmp" EXTRALIB="-f mexopts_maci64_gcc.xml" | |
| otool -L ../mcxlab/mcx.mex* | |
| else | |
| make mex MEXLINKOPT="-static-libstdc++ -static-libgcc -fopenmp" | |
| ldd ../mcxlab/mcx.mex* | |
| strip ../mcxlab/mcx.mex* | |
| upx -9 ../mcxlab/mcx.mex* | |
| fi | |
| - name: Build binary | |
| run: | | |
| cd src | |
| make clean | |
| if [[ "$RUNNER_OS" == "Linux" ]]; then | |
| make AR=g++ BACKEND=cudastatic USERLINKOPT='lib/libzmat.a -Wl,-Bstatic -lgomp -Wl,-Bdynamic' | |
| ldd ../bin/mcx | |
| elif [[ "$RUNNER_OS" == "macOS" ]]; then | |
| mkdir build && cd build && cmake .. -DCMAKE_CXX_ARCHIVE_CREATE="<CMAKE_AR> cr <TARGET> <LINK_FLAGS> <OBJECTS>" -DCMAKE_RANLIB="" && make VERBOSE=1 && cd .. | |
| otool -L ../bin/mcx | |
| otool -L ../mcxlab/mcx.mex* | |
| else | |
| make static | |
| objdump -p ../bin/mcx.exe | grep "DLL Name:" | |
| fi | |
| - name: Build mcxstudio | |
| run: | | |
| cd mcxstudio | |
| lazbuild --build-mode=release mcxshow.lpi | |
| lazbuild --build-mode=release mcxviewer.lpi | |
| lazbuild --build-mode=release mcxstudio.lpi | |
| cp debug/mcxstudio ../bin | |
| cp mcxshow ../bin | |
| cp mcxviewer ../bin | |
| cp -a locale ../bin | |
| cp README.txt ../inno/MCXStudio_README.txt | |
| - name: Create package folder | |
| run: | | |
| mkdir packages | |
| mkdir -p mcxlab/octave/${{ env.OCTAVE_ARCH }} | |
| - name: Create release tag | |
| run: perl -e "print 'RELEASE_TAG='. lc('${{ runner.os }}-${{ runner.arch }}-github-latest')" >> $GITHUB_ENV | |
| - name: Zip mcxlab | |
| run: | | |
| [[ -f mcxlab/mcx.mex ]] && mv mcxlab/mcx.mex mcxlab/octave/${{ env.OCTAVE_ARCH }} | |
| if [[ "$RUNNER_OS" == "Windows" ]]; then | |
| upx/upx-4.0.2-win64/upx mcxlab/mcx.mex* | |
| 7z a -tzip packages/mcxlab-${{ env.RELEASE_TAG }}.zip mcxlab | |
| else | |
| zip -FSr --symlink packages/mcxlab-${{ env.RELEASE_TAG }}.zip mcxlab | |
| fi | |
| - name: Upload mcxlab package | |
| if: ${{ matrix.os == 'ubuntu-20.04' || matrix.os == 'macos-13' || matrix.os == 'windows-2019' }} | |
| uses: actions/upload-artifact@v3 | |
| with: | |
| name: all-mcx-packages | |
| path: packages/mcxlab-${{ env.RELEASE_TAG }}.zip | |
| - name: Prepare mcx package | |
| run: | | |
| if [[ "$RUNNER_OS" == "macOS" ]]; then | |
| strip bin/mcx* || true | |
| cp -a mcxstudio/debug/mcxstudio.app bin | |
| cp -a mcxstudio/mcxshow.app bin | |
| cp -a mcxstudio/mcxviewer.app bin | |
| elif [[ "$RUNNER_OS" == "Windows" ]]; then | |
| rm -rf octave cuda_installer* bin/mcx.lib bin/mcx.exp | |
| strip -S bin/mcx* || true | |
| upx/upx-4.0.2-win64/upx -9 bin/mcx* || true | |
| rm -rf upx | |
| else | |
| strip bin/mcx* || true | |
| upx -9 bin/mcx* || true | |
| fi | |
| rm -rf .git .github mcxlab vsproj nsight mcxstudio src Makefile package icons genlog.sh .git* .travis* deploy icons filter mcxcloud pmcx pymcx winget inno Xcode* | |
| - name: Zip mcx | |
| run: | | |
| cd .. && pwd | |
| if [[ "$RUNNER_OS" == "Windows" ]]; then | |
| 7z a -tzip mcx/packages/mcx-${{ env.RELEASE_TAG }}.zip mcx -xr!mcx/packages | |
| else | |
| zip -FSr --symlink mcx/packages/mcx-${{ env.RELEASE_TAG }}.zip mcx -x 'mcx/packages*' | |
| fi | |
| - name: Upload mcx package | |
| if: ${{ matrix.os == 'ubuntu-20.04' || matrix.os == 'macos-13' || matrix.os == 'windows-2019' }} | |
| uses: actions/upload-artifact@v3 | |
| with: | |
| name: all-mcx-packages | |
| path: packages/mcx-${{ env.RELEASE_TAG }}.zip | |
| upload_package: | |
| name: Upload Packages | |
| needs: build_all | |
| runs-on: ubuntu-20.04 | |
| if: ${{ github.repository_owner == 'fangq' && github.event_name != 'pull_request'}} | |
| steps: | |
| - name: Download mcx | |
| uses: actions/download-artifact@v3 | |
| with: | |
| name: all-mcx-packages | |
| path: packages | |
| - name: Create all-in-one octave mcxlab | |
| run: | | |
| cd packages | |
| unzip -n 'mcxlab*.zip' | |
| tree . | |
| zip -FSr --symlink mcxlab-allinone-github-latest.zip mcxlab | |
| rm -rf mcxlab | |
| - name: Display structure of downloaded files | |
| run: ls -R packages | |
| - name: Copy package to server | |
| if: ${{ github.repository_owner == 'fangq' && github.event_name != 'pull_request'}} | |
| uses: wlixcc/[email protected] | |
| with: | |
| server: ${{ secrets.MCX_SERVER }} | |
| username: ${{ secrets.MCX_SERVER_USER }} | |
| ssh_private_key: ${{ secrets.MCX_SERVER_SSH_KEY }} | |
| local_path: "packages/*" | |
| remote_path: ${{ secrets.MCX_CI_PATH }} |