added recursive attribute to sum%finalize #314
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| name: Build and test | |
| on: | |
| push: | |
| branches: | |
| - "**" | |
| pull_request: | |
| jobs: | |
| gfortran: | |
| strategy: | |
| matrix: | |
| version: [9, 10, 11, 12, 13] | |
| os: [ubuntu-latest] | |
| include: | |
| #- version: 4.8 | |
| # os: ubuntu-18.04 | |
| # cmake_args: -DFABM_USE_IEEE_ARITHMETIC=OFF | |
| #- version: 5 | |
| # os: ubuntu-18.04 | |
| #- version: 6 | |
| # os: ubuntu-18.04 | |
| - version: 7 | |
| os: ubuntu-20.04 | |
| - version: 8 | |
| os: ubuntu-20.04 | |
| cmake_args: -DFABM_USE_CONTIGUOUS=OFF | |
| fail-fast: false | |
| runs-on: ${{ matrix.os }} | |
| env: | |
| FFLAGS: -fcheck=all | |
| steps: | |
| - name: Set up Python | |
| uses: actions/setup-python@v5 | |
| with: | |
| python-version: ">=3.7" | |
| - name: Install Python dependencies | |
| run: python -m pip install --upgrade pip pyyaml | |
| - name: Install compiler | |
| run: | | |
| sudo apt-get update | |
| sudo apt-get install gfortran-${{ matrix.version }} | |
| - name: Clone repository | |
| uses: actions/checkout@v4 | |
| with: | |
| submodules: recursive | |
| - name: Run all test cases with host emulators | |
| run: python3 util/developers/run_all_testcases.py harness --show_logs --compiler gfortran-${{ matrix.version }} ${{ matrix.cmake_args }} | |
| - name: Run all test cases with pyfabm | |
| run: python3 util/developers/run_all_testcases.py pyfabm --show_logs --compiler gfortran-${{ matrix.version }} ${{ matrix.cmake_args }} | |
| ifort: | |
| strategy: | |
| matrix: | |
| include: | |
| - version: "2021.1.2.62" | |
| url_dir: "https://registrationcenter-download.intel.com/akdlm/irc_nas/17508" | |
| - version: "2022.2.1.16992" | |
| url_dir: "https://registrationcenter-download.intel.com/akdlm/irc_nas/18998" | |
| - version: "2023.2.0.49254" | |
| url_dir: "https://registrationcenter-download.intel.com/akdlm/IRC_NAS/237236c4-434b-4576-96ac-020ceeb22619" | |
| fail-fast: false | |
| runs-on: ubuntu-latest | |
| env: | |
| FFLAGS: -check all | |
| steps: | |
| - name: Set up Python | |
| uses: actions/setup-python@v5 | |
| with: | |
| python-version: ">=3.7" | |
| - name: Install Python dependencies | |
| run: python -m pip install --upgrade pip pyyaml | |
| - name: Install compiler | |
| run: | | |
| wget --no-verbose ${{ matrix.url_dir }}/l_fortran-compiler_p_${{ matrix.version }}_offline.sh | |
| /bin/sh l_fortran-compiler_p_${{ matrix.version }}_offline.sh -a --silent --cli --install-dir ${HOME}/intel --eula accept | |
| - name: Clone repository | |
| uses: actions/checkout@v4 | |
| with: | |
| submodules: recursive | |
| - name: Run all test cases with host emulators | |
| run: | | |
| source ${HOME}/intel/setvars.sh | |
| python3 util/developers/run_all_testcases.py harness --show_logs --compiler ifort | |
| - name: Run all test cases with pyfabm | |
| run: | | |
| source ${HOME}/intel/setvars.sh | |
| python3 util/developers/run_all_testcases.py pyfabm --show_logs --compiler ifort | |
| env: | |
| FFLAGS: ${{ env.FFLAGS }} -fp-model precise -fp-model source | |
| ifx: | |
| strategy: | |
| matrix: | |
| include: | |
| - version: "2023.2.0.49254" | |
| url_dir: "https://registrationcenter-download.intel.com/akdlm/IRC_NAS/237236c4-434b-4576-96ac-020ceeb22619" | |
| fail-fast: false | |
| runs-on: ubuntu-latest | |
| env: | |
| FFLAGS: -check=all | |
| steps: | |
| - name: Set up Python | |
| uses: actions/setup-python@v5 | |
| with: | |
| python-version: ">=3.7" | |
| - name: Install Python dependencies | |
| run: python -m pip install --upgrade pip pyyaml | |
| - name: Install compiler | |
| run: | | |
| wget --no-verbose ${{ matrix.url_dir }}/l_fortran-compiler_p_${{ matrix.version }}_offline.sh | |
| /bin/sh l_fortran-compiler_p_${{ matrix.version }}_offline.sh -a --silent --cli --install-dir ${HOME}/intel --eula accept | |
| - name: Clone repository | |
| uses: actions/checkout@v4 | |
| with: | |
| submodules: recursive | |
| - name: Run all test cases with host emulators | |
| run: | | |
| source ${HOME}/intel/setvars.sh | |
| python3 util/developers/run_all_testcases.py harness --show_logs --compiler ifx | |
| - name: Run all test cases with pyfabm | |
| run: | | |
| source ${HOME}/intel/setvars.sh | |
| python3 util/developers/run_all_testcases.py pyfabm --show_logs --compiler ifx | |
| env: | |
| FFLAGS: ${{ env.FFLAGS }} -fp-model=precise | |
| nvfortran: | |
| # for available versions, see https://developer.nvidia.com/nvidia-hpc-sdk-releases | |
| strategy: | |
| matrix: | |
| include: | |
| - version: "20.9" # released 2020-10 | |
| exe: nvhpc_2020_209_Linux_x86_64_cuda_11.0 | |
| - version: "22.9" # released 2022-10 | |
| exe: nvhpc_2022_229_Linux_x86_64_cuda_11.7 | |
| - version: "23.7" # released 2023-07 | |
| exe: nvhpc_2023_237_Linux_x86_64_cuda_12.2 | |
| fail-fast: false | |
| runs-on: ubuntu-latest | |
| env: | |
| FFLAGS: -Mbounds -Mchkptr | |
| steps: | |
| - name: Free up disk space | |
| run: | | |
| sudo rm -rf /usr/share/dotnet | |
| sudo rm -rf "$AGENT_TOOLSDIRECTORY" | |
| - name: Set up Python | |
| uses: actions/setup-python@v5 | |
| with: | |
| python-version: ">=3.7" | |
| - name: Install Python dependencies | |
| run: python -m pip install --upgrade pip pyyaml | |
| - name: Install compiler | |
| run: | | |
| wget --no-verbose https://developer.download.nvidia.com/hpc-sdk/${{ matrix.version }}/${{ matrix.exe }}.tar.gz | |
| tar xpzf ${{ matrix.exe }}.tar.gz | |
| rm ${{ matrix.exe }}.tar.gz | |
| ${{ matrix.exe }}/install | |
| env: | |
| NVHPC_SILENT: true | |
| NVHPC_INSTALL_DIR: /home/runner/nvhpc | |
| NVHPC_INSTALL_TYPE: single | |
| - name: Clone repository | |
| uses: actions/checkout@v4 | |
| with: | |
| submodules: recursive | |
| - name: Run all test cases with host emulators | |
| run: python3 util/developers/run_all_testcases.py harness --show_logs --compiler /home/runner/nvhpc/Linux_x86_64/${{ matrix.version }}/compilers/bin/pgfortran | |
| - name: Run all test cases with pyfabm | |
| run: python3 util/developers/run_all_testcases.py pyfabm --show_logs --compiler /home/runner/nvhpc/Linux_x86_64/${{ matrix.version }}/compilers/bin/pgfortran | |
| aocc: | |
| # for available versions, see https://github.com/spack/spack/blob/develop/var/spack/repos/builtin/packages/aocc/package.py | |
| strategy: | |
| matrix: | |
| include: | |
| - version: "3.2.0" # released 2021-12-02 | |
| pyfabm_cmake_args: -DCMAKE_Fortran_FLAGS_DEBUG= # skip -g as that triggers segfault | |
| url_dir: https://download.amd.com/developer/eula/aocc-compiler | |
| - version: "4.0.0" # released 2022-11-10 | |
| url_dir: https://download.amd.com/developer/eula/aocc-compiler | |
| - version: "4.1.0" # released 2023-08-04 | |
| url_dir: https://download.amd.com/developer/eula/aocc/aocc-4-1 | |
| fail-fast: false | |
| runs-on: ubuntu-latest | |
| steps: | |
| - name: Set up Python | |
| uses: actions/setup-python@v5 | |
| with: | |
| python-version: ">=3.7" | |
| - name: Install Python dependencies | |
| run: python -m pip install --upgrade pip pyyaml | |
| - name: Install compiler | |
| run: | | |
| cd /home/runner | |
| wget --no-verbose ${{ matrix.url_dir }}/aocc-compiler-${{ matrix.version }}.tar | |
| tar xpf aocc-compiler-${{ matrix.version }}.tar | |
| rm aocc-compiler-${{ matrix.version }}.tar | |
| ./aocc-compiler-${{ matrix.version }}/install.sh | |
| - name: Clone repository | |
| uses: actions/checkout@v4 | |
| with: | |
| submodules: recursive | |
| - name: Run all test cases with host emulators | |
| run: | | |
| source /home/runner/setenv_AOCC.sh | |
| python3 util/developers/run_all_testcases.py harness --show_logs --compiler flang | |
| - name: Run all test cases with pyfabm | |
| run: | | |
| source /home/runner/setenv_AOCC.sh | |
| python3 util/developers/run_all_testcases.py pyfabm --show_logs --compiler flang ${{ matrix.pyfabm_cmake_args }} | |
| pyfabm: | |
| runs-on: ubuntu-latest | |
| strategy: | |
| matrix: | |
| python-version: ["3.7", "3.8", "3.9", "3.10", "3.11"] | |
| fail-fast: false | |
| steps: | |
| - name: Clone repository | |
| uses: actions/checkout@v4 | |
| with: | |
| submodules: recursive | |
| - name: Set up Python ${{ matrix.python-version }} | |
| uses: actions/setup-python@v5 | |
| with: | |
| python-version: ${{ matrix.python-version }} | |
| - name: Install dependencies | |
| run: python -m pip install --upgrade pip build | |
| - name: Build distribution | |
| run: python -m build | |
| - name: Install | |
| run: python -m pip install . | |
| - name: Test | |
| run: | | |
| python -c "import pyfabm;print('pyfabm version =', getattr(pyfabm, '__version__', None))" | |
| for f in testcases/*.yaml; do fabm_describe_model $f; done | |
| for f in testcases/*.yaml; do fabm_complete_yaml --add_missing $f; done | |
| fabm0d: | |
| runs-on: ubuntu-latest | |
| steps: | |
| - name: Install NetCDF | |
| run: | | |
| sudo apt-get update | |
| sudo apt-get install libnetcdff-dev | |
| - name: Clone FABM | |
| uses: actions/checkout@v4 | |
| with: | |
| submodules: recursive | |
| - name: Clone GOTM | |
| uses: actions/checkout@v4 | |
| with: | |
| repository: gotm-model/code | |
| ref: v6.0 | |
| path: gotm | |
| submodules: recursive | |
| - name: Build | |
| run: | | |
| cmake -S src/drivers/0d -B build -DGOTM_BASE=gotm | |
| cmake --build build --target install | |
| stat ~/local/fabm/0d/bin/fabm0d | |
| cmake: | |
| strategy: | |
| matrix: | |
| cmake-version: ["3.13"] | |
| runs-on: ubuntu-latest | |
| steps: | |
| - name: Clone FABM | |
| uses: actions/checkout@v4 | |
| with: | |
| submodules: recursive | |
| - name: Download and extract cmake | |
| run: | | |
| wget --no-verbose https://cmake.org/files/v${{ matrix.cmake-version }}/cmake-${{ matrix.cmake-version }}.0-Linux-x86_64.tar.gz | |
| tar -xvf cmake-${{ matrix.cmake-version }}.0-Linux-x86_64.tar.gz | |
| - name: Build | |
| run: | | |
| cmake-${{ matrix.cmake-version }}.0-Linux-x86_64/bin/cmake -S . -B build | |
| cmake-${{ matrix.cmake-version }}.0-Linux-x86_64/bin/cmake --build build --target install |