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v0.3.7

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@fredericlemoine fredericlemoine released this 14 Nov 13:40
· 17 commits to master since this release
3d96af9
  • Added option --aa to goalign stats mutations list
  • Added option--reverse to goalign clean sites
  • Added multi characters to option --char of goalign clean sites
  • goalign extract supports '-' strand sequences
  • Added option --ref-seq option to goalign translate and goalign extract --translate
  • Added option --posfile to goalign replace: to replace specific characters at specific positions of specific sequences in an input alignment
  • Added AB model (https://doi.org/10.1093%2Fmolbev%2Fmsu340)
  • Updated LG model
  • Added option -l to goalign concat to keep information of the coordinates of all input alignments in the concatenated alignment