v1.6

Changes:

• redefined growth model

  • max cell weight value is used as upper bound for biomass reaction to avoid biomass accumulation in case of overcrowding
  • deathrate is now scaled according to time steps

• fixed several issues related to grid geometry (relevant for non-square grids)

• handling of alternative solutions with flux variability analysis

• diffusion and advection can be blocked for occupied cells

• corrected bugs related to continuing of simulations

• expanded tutorial

• renamed growth to biomass in arena@orgdat

• fast stiring

• vectorized addOrg

• new reactions

  • plotReaActivity (plot reaction activity)
  • findRxnFlux (find usage of metabolite in reactions)
  • plotSubDist, plotSubDist2 (plot spatial distribution for substances)