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FIX: change link format, was MD #1757

FIX: change link format, was MD

FIX: change link format, was MD #1757

name: Run Basic Tests
on:
# Triggers the workflow on push or pull request events
push:
branches:
- master
- dev
pull_request:
# Allows you to run this workflow manually from the Actions tab
workflow_dispatch:
jobs:
build-linux:
runs-on: ubuntu-latest
strategy:
max-parallel: 1
steps:
- uses: actions/checkout@v2
- name: Set up Python 3.10
uses: actions/setup-python@v2
with:
python-version: "3.10"
- name: Install poetry
run: |
pip install poetry
- name: Install SyNCoPy
run: |
poetry install
- name: Lint with flake8
run: |
# stop the build if there are Python syntax errors or undefined names
poetry run flake8 . --count --select=E9,F63,F7,F82 --show-source --statistics
# exit-zero treats all errors as warnings. The GitHub editor is 127 chars wide
poetry run flake8 . --count --exit-zero --max-complexity=10 --max-line-length=127 --statistics
- name: Install optional dependency pynwb
run: |
poetry add pynwb
- name: Test with pytest and get coverage
run: |
cd syncopy/tests
# run parallel tests only for base CR
poetry run pytest -k 'computationalroutine and parallel'
# don't run general parallel tests
poetry run pytest -k 'not parallel' --color=yes --tb=short --verbose --cov=../../syncopy --cov-config=../../.coveragerc --cov-report=xml
- name: Upload coverage to Codecov
uses: codecov/codecov-action@v2
with:
name: syncopy-codecov
verbose: true