release 0.0.5

.github/workflows/R-CMD-check.yml

@@ -9,6 +9,7 @@ on:
     branches:
       - main
       - master
+  workflow_dispatch:
 
 name: R-CMD-check
 
@@ -18,15 +19,17 @@ jobs:
     env:
       GITHUB_PAT: ${{ secrets.GITHUB_TOKEN }}
     steps:
-      - uses: actions/checkout@v2
-      - uses: r-lib/actions/setup-r@v1
-      - name: Install dependencies
-        run: |
-          install.packages(c("remotes", "rcmdcheck"))
-          remotes::install_deps(dependencies = TRUE)
-        shell: Rscript {0}
-      - name: Check
-        run: |
-          options(crayon.enabled = TRUE)
-          rcmdcheck::rcmdcheck(args = "--no-manual", error_on = "error")
-        shell: Rscript {0}
+      - uses: actions/checkout@v3
+
+      - uses: r-lib/actions/setup-r@v2
+        with:
+          use-public-rspm: true
+
+      - uses: r-lib/actions/setup-r-dependencies@v2
+        with:
+          extra-packages: any::rcmdcheck
+          needs: check
+
+      - uses: r-lib/actions/check-r-package@v2
+        with:
+          error-on: '"note"'

.github/workflows/articles.yml

@@ -1,28 +1,31 @@
-# For help debugging build failures open an issue on the RStudio community with the 'github-actions' tag.
-# https://community.rstudio.com/new-topic?category=Package%20development&tags=github-actions
+# Workflow derived from https://github.com/r-lib/actions/tree/v2/examples
+# Need help debugging build failures? Start at https://github.com/r-lib/actions#where-to-find-help
 on:
   push:
-    branches:
-      - main
-      - master
+    branches: [main, master]
   pull_request:
-    branches:
-      - main
-      - master
+    branches: [main, master]
+  workflow_dispatch:
 
 name: articles
 
 jobs:
   articles:
-    runs-on: macOS-latest
+    runs-on: ubuntu-latest
     env:
       GITHUB_PAT: ${{ secrets.GITHUB_TOKEN }}
+      R_KEEP_PKG_SOURCE: yes
     steps:
-      - uses: actions/checkout@v2
-      - uses: r-lib/actions/setup-r@v1
-      - uses: r-lib/actions/setup-pandoc@master
-      - name: Install system dependencies
-        run: brew install harfbuzz fribidi      
+      - uses: actions/checkout@v3
+
+      - uses: r-lib/actions/setup-r@v2
+        with:
+          use-public-rspm: true
+
+      - uses: r-lib/actions/setup-r-dependencies@v2
+        with:
+          extra-packages: any::rcmdcheck
+          needs: check
       - name: Install dependencies
         run: |
           install.packages(c("remotes", "devtools", "tidyverse", "pkgdown"))
@@ -32,4 +35,4 @@ jobs:
       - name: Check
         run: |
           pkgdown::build_articles()
-        shell: Rscript {0}
+        shell: Rscript {0}

.github/workflows/pkgdown.yml

@@ -1,49 +1,55 @@
+# Workflow derived from https://github.com/r-lib/actions/tree/v2/examples
+# Need help debugging build failures? Start at https://github.com/r-lib/actions#where-to-find-help
 on:
   push:
-    branches:
-      - main
-      - master
+    branches: [main, master]
+  pull_request:
+    branches: [main, master]
+  release:
+    types: [published]
+  workflow_dispatch:
 
 name: pkgdown
 
 jobs:
   pkgdown:
-    runs-on: macOS-latest
+    runs-on: ubuntu-latest
+    # Only restrict concurrency for non-PR jobs
+    concurrency:
+      group: pkgdown-${{ github.event_name != 'pull_request' || github.run_id }}
     env:
       GITHUB_PAT: ${{ secrets.GITHUB_TOKEN }}
+    permissions:
+      contents: write
     steps:
-      - uses: actions/checkout@v2
+      - uses: actions/checkout@v3
 
-      - uses: r-lib/actions/setup-r@v1
+      - uses: r-lib/actions/setup-pandoc@v2
 
-      - uses: r-lib/actions/setup-pandoc@master
-
-      - name: Query dependencies
-        run: |
-          install.packages('remotes')
-          saveRDS(remotes::dev_package_deps(dependencies = TRUE), ".github/depends.Rds", version = 2)
-          writeLines(sprintf("R-%i.%i", getRversion()$major, getRversion()$minor), ".github/R-version")
-        shell: Rscript {0}
-
-      - name: Cache R packages
-        uses: actions/cache@v2
+      - uses: r-lib/actions/setup-r@v2
         with:
-          path: ${{ env.R_LIBS_USER }}
-          key: ${{ runner.os }}-${{ hashFiles('.github/R-version') }}-1-${{ hashFiles('.github/depends.Rds') }}
-          restore-keys: ${{ runner.os }}-${{ hashFiles('.github/R-version') }}-1-
+          use-public-rspm: true
 
+      - uses: r-lib/actions/setup-r-dependencies@v2
+        with:
+          extra-packages: any::pkgdown, local::.
+          needs: website
       - name: Install dependencies
         run: |
-          remotes::install_deps(dependencies = TRUE)
-          install.packages("tidyverse")
-          install.packages("pkgdown", type = "binary")
+          install.packages("devtools")
+          system("git clone https://github.com/erblast/parcats.git")
+          devtools::install("parcats/", dependencies = TRUE)
         shell: Rscript {0}
 
-      - name: Install package
-        run: R CMD INSTALL .
 
-      - name: Deploy package
-        run: |
-          git config --local user.email "[email protected]"
-          git config --local user.name "GitHub Actions"
-          Rscript -e 'pkgdown::deploy_to_branch(new_process = FALSE, run_dont_run = TRUE)'
+      - name: Build site
+        run: pkgdown::build_site_github_pages(new_process = FALSE, install = FALSE)
+        shell: Rscript {0}
+
+      - name: Deploy to GitHub pages 🚀
+        if: github.event_name != 'pull_request'
+        uses: JamesIves/[email protected]
+        with:
+          clean: false
+          branch: gh-pages
+          folder: docs

DESCRIPTION

@@ -1,6 +1,6 @@
 Package: parcats
 Title: Interactive Parallel Categories Diagrams for 'easyalluvial'
-Version: 0.0.4
+Version: 0.0.5
 Authors@R: person( "Bjoern", "Koneswarakantha", role = c("aut","cre"), email = "[email protected]", comment = c(ORCID = "0000-0003-4585-7799") )
 URL: https://erblast.github.io/parcats/
 BugReports: https://github.com/erblast/parcats/issues/
@@ -22,7 +22,7 @@ Suggests:
     spelling,
     plotly,
     shiny
-RoxygenNote: 7.2.0
+RoxygenNote: 7.2.3
 Imports:
   easyalluvial (>= 0.2.1.0),
   tidyr (>= 1.0.0),

NEWS.md

@@ -1,3 +1,6 @@
+# parcats 0.0.5
+* resubmit to CRAN
+
 # parcats 0.0.4
 * updated package dependencies
 

cran-comments.md

@@ -1,8 +1,7 @@
-# resubmission 0.0.4 - 1
-* changed example to dont run because it takes > 10s to execute on some CRAN test servers
 
-# parcats 0.0.4
-clean up package dependencies
+# parcats 0.0.5
+Resubmit to CRAN after being archived.
+Dependency 'easyalluvial' on CRAN again
 
 ## revdepcheck results
 no reverse dependencies