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Merge pull request #32 from erblast/issue_30
Issue 30
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Original file line number | Diff line number | Diff line change |
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@@ -1,46 +1,51 @@ | ||
# Workflow derived from https://github.com/r-lib/actions/tree/v2/examples | ||
# Need help debugging build failures? Start at https://github.com/r-lib/actions#where-to-find-help | ||
on: | ||
push: | ||
branches: | ||
- master | ||
branches: [main, master] | ||
pull_request: | ||
branches: | ||
- master | ||
branches: [main, master] | ||
workflow_dispatch: | ||
|
||
name: test-coverage | ||
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jobs: | ||
test-coverage: | ||
runs-on: macOS-latest | ||
runs-on: ubuntu-latest | ||
env: | ||
GITHUB_PAT: ${{ secrets.GITHUB_TOKEN }} | ||
|
||
steps: | ||
- uses: actions/checkout@v2 | ||
- uses: actions/checkout@v3 | ||
|
||
- uses: r-lib/actions/setup-r@master | ||
- uses: r-lib/actions/setup-r@v2 | ||
with: | ||
use-public-rspm: true | ||
|
||
- uses: r-lib/actions/setup-pandoc@master | ||
- uses: r-lib/actions/setup-r-dependencies@v2 | ||
with: | ||
extra-packages: any::covr | ||
needs: coverage | ||
|
||
- name: Query dependencies | ||
- name: Test coverage | ||
run: | | ||
install.packages('remotes') | ||
saveRDS(remotes::dev_package_deps(dependencies = TRUE), ".github/depends.Rds", version = 2) | ||
writeLines(sprintf("R-%i.%i", getRversion()$major, getRversion()$minor), ".github/R-version") | ||
covr::codecov( | ||
quiet = FALSE, | ||
clean = FALSE, | ||
install_path = file.path(normalizePath(Sys.getenv("RUNNER_TEMP"), winslash = "/"), "package") | ||
) | ||
shell: Rscript {0} | ||
|
||
- name: Cache R packages | ||
uses: actions/cache@v1 | ||
with: | ||
path: ${{ env.R_LIBS_USER }} | ||
key: ${{ runner.os }}-${{ hashFiles('.github/R-version') }}-1-${{ hashFiles('.github/depends.Rds') }} | ||
restore-keys: ${{ runner.os }}-${{ hashFiles('.github/R-version') }}-1- | ||
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- name: Install dependencies | ||
- name: Show testthat output | ||
if: always() | ||
run: | | ||
install.packages(c("remotes")) | ||
remotes::install_deps(dependencies = TRUE) | ||
remotes::install_cran("covr") | ||
shell: Rscript {0} | ||
## -------------------------------------------------------------------- | ||
find ${{ runner.temp }}/package -name 'testthat.Rout*' -exec cat '{}' \; || true | ||
shell: bash | ||
|
||
- name: Test coverage | ||
run: covr::codecov() | ||
shell: Rscript {0} | ||
- name: Upload test results | ||
if: failure() | ||
uses: actions/upload-artifact@v3 | ||
with: | ||
name: coverage-test-failures | ||
path: ${{ runner.temp }}/package |
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Original file line number | Diff line number | Diff line change |
---|---|---|
@@ -1,52 +1,55 @@ | ||
# Workflow derived from https://github.com/r-lib/actions/tree/v2/examples | ||
# Need help debugging build failures? Start at https://github.com/r-lib/actions#where-to-find-help | ||
on: | ||
push: | ||
branches: | ||
- main | ||
- master | ||
branches: [main, master] | ||
pull_request: | ||
branches: [main, master] | ||
release: | ||
types: [published] | ||
workflow_dispatch: | ||
|
||
name: pkgdown | ||
|
||
jobs: | ||
pkgdown: | ||
runs-on: macOS-latest | ||
runs-on: ubuntu-latest | ||
# Only restrict concurrency for non-PR jobs | ||
concurrency: | ||
group: pkgdown-${{ github.event_name != 'pull_request' || github.run_id }} | ||
env: | ||
GITHUB_PAT: ${{ secrets.GITHUB_TOKEN }} | ||
permissions: | ||
contents: write | ||
steps: | ||
- uses: actions/checkout@v2 | ||
- uses: actions/checkout@v3 | ||
|
||
- uses: r-lib/actions/setup-r@v1 | ||
- uses: r-lib/actions/setup-pandoc@v2 | ||
|
||
- uses: r-lib/actions/setup-pandoc@master | ||
|
||
- name: Query dependencies | ||
run: | | ||
install.packages('remotes') | ||
saveRDS(remotes::dev_package_deps(dependencies = TRUE), ".github/depends.Rds", version = 2) | ||
writeLines(sprintf("R-%i.%i", getRversion()$major, getRversion()$minor), ".github/R-version") | ||
shell: Rscript {0} | ||
|
||
- name: Cache R packages | ||
uses: actions/cache@v2 | ||
- uses: r-lib/actions/setup-r@v2 | ||
with: | ||
path: ${{ env.R_LIBS_USER }} | ||
key: ${{ runner.os }}-${{ hashFiles('.github/R-version') }}-1-${{ hashFiles('.github/depends.Rds') }} | ||
restore-keys: ${{ runner.os }}-${{ hashFiles('.github/R-version') }}-1- | ||
use-public-rspm: true | ||
|
||
- uses: r-lib/actions/setup-r-dependencies@v2 | ||
with: | ||
extra-packages: any::pkgdown, local::. | ||
needs: website | ||
- name: Install dependencies | ||
run: | | ||
remotes::install_deps(dependencies = TRUE) | ||
install.packages("tidyverse") | ||
install.packages("pkgdown", type = "binary") | ||
install.packages("devtools") | ||
system("git clone https://github.com/erblast/parcats.git") | ||
remotes::install_deps("parcats/", dependencies = TRUE) | ||
devtools::install("parcats/") | ||
devtools::install("parcats/", dependencies = TRUE) | ||
shell: Rscript {0} | ||
|
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- name: Install package | ||
run: R CMD INSTALL . | ||
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- name: Deploy package | ||
run: | | ||
git config --local user.email "[email protected]" | ||
git config --local user.name "GitHub Actions" | ||
Rscript -e 'pkgdown::deploy_to_branch(new_process = FALSE, run_dont_run = FALSE)' | ||
- name: Build site | ||
run: pkgdown::build_site_github_pages(new_process = FALSE, install = FALSE) | ||
shell: Rscript {0} | ||
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- name: Deploy to GitHub pages 🚀 | ||
if: github.event_name != 'pull_request' | ||
uses: JamesIves/[email protected] | ||
with: | ||
clean: false | ||
branch: gh-pages | ||
folder: docs |
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Original file line number | Diff line number | Diff line change |
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|
@@ -8,4 +8,5 @@ docs/ | |
*.rdx | ||
*.RData | ||
*.rdb | ||
vignettes/model_response_cache/ | ||
vignettes/model_response_cache/ | ||
.DS_Store |
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Original file line number | Diff line number | Diff line change |
---|---|---|
@@ -1,6 +1,6 @@ | ||
Package: easyalluvial | ||
Title: Generate Alluvial Plots with a Single Line of Code | ||
Version: 0.3.1 | ||
Version: 0.3.1.900 | ||
Authors@R: person( "Bjoern", "Koneswarakantha", role = c("aut","cre"), email = "[email protected]", comment = c(ORCID = "0000-0003-4585-7799") ) | ||
URL: https://github.com/erblast/easyalluvial/ | ||
Description: Alluvial plots are similar to sankey diagrams and visualise categorical data | ||
|
@@ -39,7 +39,7 @@ Suggests: | |
rpart, | ||
glmnet, | ||
xgboost | ||
RoxygenNote: 7.2.0 | ||
RoxygenNote: 7.2.3 | ||
Imports: | ||
purrr | ||
, tidyr (>= 1.0.0) | ||
|
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