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Simplify fit_seromodel() output and related refactorizations #109

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merged 15 commits into from
Aug 24, 2023

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@ntorresd ntorresd commented Aug 15, 2023

This PR fixes #104 and implements a first simplification of fit_seromodel()'s output (see #89).
This PR should be merged after #107

@ntorresd ntorresd changed the title Refac fit seromodel Simplify fit_seromodel() output and related refactorizations Aug 15, 2023
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Codecov Report

Merging #109 (82197bc) into main (d7f66d7) will increase coverage by 0.40%.
The diff coverage is 95.65%.

❗ Current head 82197bc differs from pull request most recent head 034e63e. Consider uploading reports for the commit 034e63e to get more accurate results

@@            Coverage Diff             @@
##             main     #109      +/-   ##
==========================================
+ Coverage   82.18%   82.59%   +0.40%     
==========================================
  Files          10       10              
  Lines        1684     1660      -24     
==========================================
- Hits         1384     1371      -13     
+ Misses        300      289      -11     
Files Changed Coverage Δ
R/seroprevalence_data.R 100.00% <ø> (ø)
R/modelling.R 90.68% <93.75%> (+4.66%) ⬆️
R/model_comparison.R 83.33% <100.00%> (ø)
R/visualisation.R 56.34% <100.00%> (+0.22%) ⬆️

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@ntorresd ntorresd mentioned this pull request Aug 15, 2023
@ntorresd ntorresd changed the base branch from main to dev August 17, 2023 12:55
@ntorresd ntorresd changed the base branch from dev to issue-106-serodata August 22, 2023 22:52
Base automatically changed from issue-106-serodata to dev August 22, 2023 23:09
@ntorresd ntorresd requested review from jpavlich and removed request for GeraldineGomez August 22, 2023 23:11
@ntorresd ntorresd marked this pull request as ready for review August 22, 2023 23:11
@jpavlich jpavlich merged commit 5154176 into dev Aug 24, 2023
@jpavlich jpavlich deleted the refac-fit_seromodel branch August 24, 2023 15:09
@ntorresd ntorresd restored the refac-fit_seromodel branch September 5, 2023 19:21
@ntorresd ntorresd deleted the refac-fit_seromodel branch September 5, 2023 19:23
Bisaloo pushed a commit that referenced this pull request Oct 10, 2023
 Simplify fit_seromodel() output and related refactorizations
ntorresd pushed a commit that referenced this pull request Oct 10, 2023
 Simplify fit_seromodel() output and related refactorizations
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Refactor FoI central estimates computation into a separate function
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