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epinowcast · Oct 3, 2024 · f59fbf9 · f59fbf9
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Showing 8 changed files with 16 additions and 74 deletions.
diff --git a/NAMESPACE b/NAMESPACE
@@ -21,8 +21,6 @@ export(as_latent_individual)
 export(epidist)
 export(epidist_diagnostics)
 export(epidist_family)
-export(epidist_family_family)
-export(epidist_family_model)
 export(epidist_family_prior)
 export(epidist_formula)
 export(epidist_model_prior)

diff --git a/R/family.R b/R/family.R
diff --git a/R/globals.R b/R/globals.R
@@ -1,13 +1,22 @@
 # Generated by roxyglobals: do not edit by hand
 
 utils::globalVariables(c(
+  ".data", # <epidist_diagnostics>
   "samples", # <epidist_diagnostics>
+  ".data", # <as_latent_individual.data.frame>
   "stime_lwr", # <as_latent_individual.data.frame>
   "stime_upr", # <as_latent_individual.data.frame>
   "ptime_upr", # <as_latent_individual.data.frame>
   "woverlap", # <epidist_stancode.epidist_latent_individual>
+  ".data", # <observe_process>
+  ".data", # <filter_obs_by_obs_time>
+  ".data", # <filter_obs_by_ptime>
   ":=", # <filter_obs_by_ptime>
+  ".data", # <add_mean_sd.lognormal_samples>
+  ".data", # <add_mean_sd.gamma_samples>
   "rlnorm", # <simulate_secondary>
+  ".data", # <simulate_secondary>
+  ".data", # <.replace_prior>
   "prior_new", # <.replace_prior>
   "source_new", # <.replace_prior>
   NULL

diff --git a/R/latent_individual.R b/R/latent_individual.R
@@ -104,7 +104,7 @@ is_latent_individual <- function(data) {
   inherits(data, "epidist_latent_individual")
 }
 
-#' Create an `epidist` custom family for the latent_individual model
+#' Check if data has the `epidist_latent_individual` class
 #'
 #' @param data A `data.frame` containing line list data
 #' @param family Output of a call to `brms::brmsfamily()`

diff --git a/inst/scratch.R b/inst/scratch.R
diff --git a/man/epidist_family.Rd b/man/epidist_family.Rd
diff --git a/man/epidist_family.default.Rd b/man/epidist_family.default.Rd
diff --git a/man/epidist_family.epidist_latent_individual.Rd b/man/epidist_family.epidist_latent_individual.Rd