Run document

epinowcast · Nov 22, 2024 · 9a471ab · 9a471ab
1 parent 1ab0450
commit 9a471ab
Show file tree

Hide file tree

Showing 8 changed files with 163 additions and 0 deletions.
diff --git a/NAMESPACE b/NAMESPACE
@@ -6,27 +6,33 @@ S3method(add_mean_sd,lognormal_samples)
 S3method(as_epidist_latent_model,epidist_linelist_data)
 S3method(as_epidist_linelist_data,data.frame)
 S3method(as_epidist_linelist_data,default)
+S3method(as_epidist_marginal_model,epidist_linelist_data)
 S3method(as_epidist_naive_model,epidist_linelist_data)
 S3method(assert_epidist,default)
 S3method(assert_epidist,epidist_latent_model)
 S3method(assert_epidist,epidist_linelist_data)
+S3method(assert_epidist,epidist_marginal_model)
 S3method(assert_epidist,epidist_naive_model)
 S3method(epidist,default)
 S3method(epidist_family_model,default)
 S3method(epidist_family_model,epidist_latent_model)
+S3method(epidist_family_model,epidist_marginal_model)
 S3method(epidist_family_prior,default)
 S3method(epidist_family_prior,lognormal)
 S3method(epidist_family_reparam,default)
 S3method(epidist_family_reparam,gamma)
 S3method(epidist_formula_model,default)
 S3method(epidist_formula_model,epidist_latent_model)
+S3method(epidist_formula_model,epidist_marginal_model)
 S3method(epidist_model_prior,default)
 S3method(epidist_stancode,default)
 S3method(epidist_stancode,epidist_latent_model)
+S3method(epidist_stancode,epidist_marginal_model)
 export(Gamma)
 export(add_mean_sd)
 export(as_epidist_latent_model)
 export(as_epidist_linelist_data)
+export(as_epidist_marginal_model)
 export(as_epidist_naive_model)
 export(assert_epidist)
 export(bf)
@@ -45,10 +51,12 @@ export(epidist_prior)
 export(epidist_stancode)
 export(is_epidist_latent_model)
 export(is_epidist_linelist_data)
+export(is_epidist_marginal_model)
 export(is_epidist_naive_model)
 export(lognormal)
 export(new_epidist_latent_model)
 export(new_epidist_linelist_data)
+export(new_epidist_marginal_model)
 export(new_epidist_naive_model)
 export(predict_delay_parameters)
 export(predict_dpar)

diff --git a/R/globals.R b/R/globals.R
@@ -3,6 +3,7 @@
 utils::globalVariables(c(
   "samples", # <epidist_diagnostics>
   "woverlap", # <epidist_stancode.epidist_latent_model>
+  "delay", # <as_epidist_marginal_model.epidist_linelist_data>
   "rlnorm", # <simulate_secondary>
   "prior_new", # <.replace_prior>
   "source_new", # <.replace_prior>

diff --git a/man/as_epidist_marginal_model.Rd b/man/as_epidist_marginal_model.Rd
diff --git a/man/as_epidist_marginal_model.epidist_linelist_data.Rd b/man/as_epidist_marginal_model.epidist_linelist_data.Rd
diff --git a/man/epidist_family_model.epidist_marginal_model.Rd b/man/epidist_family_model.epidist_marginal_model.Rd
diff --git a/man/epidist_formula_model.epidist_marginal_model.Rd b/man/epidist_formula_model.epidist_marginal_model.Rd
diff --git a/man/is_epidist_marginal_model.Rd b/man/is_epidist_marginal_model.Rd
diff --git a/man/new_epidist_marginal_model.Rd b/man/new_epidist_marginal_model.Rd