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A refactor of Greninger Lab's vapid3 viral annotation pipeline.

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epiliper/vapid4

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to run:

docker build . -t <name_of_image>

docker run -it -v $(<filepath to dir with input files>) <name_of_image>

python3 -m vapid4 <input_fasta> <author .sbt file> --src_file <.src file> --output_loc <output dir> --align_dir <alignment dir>

release:

to unarchive release, run:

tar -xvzf <release_name>.tar.gz

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A refactor of Greninger Lab's vapid3 viral annotation pipeline.

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