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add docker + vscode support
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seabbs committed Feb 3, 2022
1 parent 3f23387 commit c1d5be7
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1 change: 1 addition & 0 deletions .Rbuildignore
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^doc$
^Meta$
^_pkgdown\.yml$
^\.devcontainer$
50 changes: 50 additions & 0 deletions .devcontainer/Dockerfile
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# R version: 4, 4.1, 4.0
ARG VARIANT="4"
FROM rocker/r-ver:${VARIANT}

# Use the [Option] comment to specify true/false arguments that should appear in VS Code UX
#
# [Option] Install zsh
ARG INSTALL_ZSH="true"
# [Option] Upgrade OS packages to their latest versions
ARG UPGRADE_PACKAGES="false"

# Install needed packages and setup non-root user. Use a separate RUN statement to add your own dependencies.
ARG USERNAME=vscode
ARG USER_UID=1000
ARG USER_GID=$USER_UID
COPY .devcontainer/library-scripts/*.sh /tmp/library-scripts/
RUN apt-get update && export DEBIAN_FRONTEND=noninteractive \
&& /bin/bash /tmp/library-scripts/common-debian.sh "${INSTALL_ZSH}" "${USERNAME}" "${USER_UID}" "${USER_GID}" "${UPGRADE_PACKAGES}" "true" "true" \
&& usermod -a -G staff ${USERNAME} \
&& apt-get -y install \
python3-pip \
libgit2-dev \
libcurl4-openssl-dev \
libssl-dev \
libxml2-dev \
libxt-dev \
&& apt-get autoremove -y && apt-get clean -y && rm -rf /var/lib/apt/lists/* /tmp/library-scripts \
&& python3 -m pip --no-cache-dir install radian \
&& install2.r --error --skipinstalled --ncpus -1 \
devtools \
languageserver \
httpgd \
&& rm -rf /tmp/downloaded_packages

# VSCode R Debugger dependency. Install the latest release version from GitHub without using GitHub API.
# See https://github.com/microsoft/vscode-dev-containers/issues/1032
RUN export TAG=$(git ls-remote --tags --refs --sort='version:refname' https://github.com/ManuelHentschel/vscDebugger v\* | tail -n 1 | cut --delimiter='/' --fields=3) \
&& Rscript -e "remotes::install_git('https://github.com/ManuelHentschel/vscDebugger.git', ref = '"${TAG}"', dependencies = FALSE)"

RUN apt-get update \
&& export DEBIAN_FRONTEND=noninteractive \
&& apt-get -y install --no-install-recommends libglpk-dev libv8-dev \
pandoc-citeproc libpng-dev

# install vscode dev deps
RUN Rscript -e 'devtools::install_github("mdlincoln/docthis")'

# install dependencies
COPY DESCRIPTION /tmp/package/DESCRIPTION
RUN Rscript -e "devtools::install_deps('/tmp/package', dependencies = TRUE)"
35 changes: 35 additions & 0 deletions .devcontainer/devcontainer.json
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// For format details, see https://aka.ms/devcontainer.json. For config options, see the README at:
// https://github.com/microsoft/vscode-dev-containers/tree/v0.209.6/containers/r
{
"name": "scoringutils",
"image": "ghcr.io/epiforecasts/scoringutils:master",

// Set *default* container specific settings.json values on container create.
"settings": {
"r.rterm.linux": "/usr/local/bin/radian",
"r.bracketedPaste": true,
"r.plot.useHttpgd": true,
"[r]": {
"editor.wordSeparators": "`~!@#%$^&*()-=+[{]}\\|;:'\",<>/?"
}
},

// Add the IDs of extensions you want installed when the container is created.
"extensions": [
"ikuyadeu.r",
"tomoki1207.pdf",
"github.vscode-pull-request-github",
"formulahendry.code-runner",
"mutantdino.resourcemonitor",
"searking.preview-vscode"
],

// Use 'forwardPorts' to make a list of ports inside the container available locally.
// "forwardPorts": [],

// Use 'postCreateCommand' to run commands after the container is created.
// "postCreateCommand": "R --version",

// Comment out connect as root instead. More info: https://aka.ms/vscode-remote/containers/non-root.
"remoteUser": "vscode"
}
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