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Directly calculated growth #610

Merged
merged 7 commits into from
Mar 22, 2024
Merged

Directly calculated growth #610

merged 7 commits into from
Mar 22, 2024

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sbfnk
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@sbfnk sbfnk commented Mar 12, 2024

Description

This PR finishes splits out the direct growth rate calculation from #345 in order to make finishing that work more manageable. It was originally proposed in #213.

Initial submission checklist

  • My PR is based on a package issue and I have explicitly linked it.
  • I have tested my changes locally (using devtools::test() and devtools::check()).
  • I have added or updated unit tests where necessary.
  • I have updated the documentation if required and rebuilt docs if yes (using devtools::document()).
  • I have followed the established coding standards (and checked using lintr::lint_package()).
  • I have added a news item linked to this PR.

After the initial Pull Request

  • I have reviewed Checks for this PR and addressed any issues as far as I am able.

@sbfnk sbfnk force-pushed the directly-calculated-growth branch from 18760dc to 0780ec2 Compare March 12, 2024 17:24
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This is how benchmark results would change (along with a 95% confidence interval in relative change) if 19b5707 is merged into main:

  • ✔️default: 41.3s -> 34.2s [-44.04%, +9.41%]
  • ✔️no_delays: 40.1s -> 39.4s [-11.29%, +7.68%]
  • ✔️random_walk: 10s -> 9.73s [-15.96%, +10.57%]
  • ✔️stationary: 19.8s -> 19.7s [-6.91%, +5.99%]
  • ✔️uncertain: 52.1s -> 51.7s [-21.85%, +20.38%]
    Further explanation regarding interpretation and methodology can be found in the documentation.

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This is how benchmark results would change (along with a 95% confidence interval in relative change) if 19b5707 is merged into main:

  • ✔️default: 32.5s -> 32.1s [-11.51%, +8.79%]
  • ✔️no_delays: 38.5s -> 48.5s [-35.52%, +87.14%]
  • ✔️random_walk: 10s -> 10.8s [-18.25%, +33.23%]
  • ✔️stationary: 20.3s -> 24.8s [-41.81%, +86.83%]
  • ✔️uncertain: 55.1s -> 56.6s [-12.59%, +17.87%]
    Further explanation regarding interpretation and methodology can be found in the documentation.

@sbfnk sbfnk enabled auto-merge (squash) March 12, 2024 23:01
@sbfnk sbfnk requested a review from seabbs March 14, 2024 08:51
@sbfnk sbfnk force-pushed the directly-calculated-growth branch from 8f440bd to a16e9bd Compare March 15, 2024 09:35
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This is how benchmark results would change (along with a 95% confidence interval in relative change) if 3b3b2a7 is merged into main:

  • ✔️default: 38s -> 37.5s [-14.93%, +11.85%]
  • ✔️no_delays: 44.7s -> 40s [-23.74%, +2.73%]
  • ✔️random_walk: 10.8s -> 11.6s [-3.72%, +17.64%]
  • ✔️stationary: 21.1s -> 21.4s [-10.32%, +12.34%]
  • ✔️uncertain: 1.02m -> 57.4s [-34.97%, +21.53%]
    Further explanation regarding interpretation and methodology can be found in the documentation.

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This is how benchmark results would change (along with a 95% confidence interval in relative change) if 3b3b2a7 is merged into main:

  • ✔️default: 37.1s -> 37.4s [-14.73%, +16.38%]
  • ✔️no_delays: 41.9s -> 43.7s [-14.94%, +23.4%]
  • ❗🐌random_walk: 10.1s -> 11.3s [+1.88%, +21.21%]
  • ❗🐌stationary: 18.9s -> 21.2s [+1.9%, +22.6%]
  • ✔️uncertain: 54.5s -> 53.3s [-20.16%, +15.89%]
    Further explanation regarding interpretation and methodology can be found in the documentation.

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seabbs
seabbs previously approved these changes Mar 22, 2024
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Yup looks good. Just need a news file spelling update

Co-authored-by: Sam Abbott <[email protected]>
@sbfnk sbfnk enabled auto-merge (squash) March 22, 2024 20:51
@sbfnk sbfnk disabled auto-merge March 22, 2024 20:51
@sbfnk sbfnk merged commit 93c072d into main Mar 22, 2024
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@sbfnk sbfnk deleted the directly-calculated-growth branch March 22, 2024 20:51
sbfnk added a commit that referenced this pull request May 3, 2024
* switch to directly calculated growth rate

* remove superseded function

* add news item

* avoid conversion

* add skips

* add test for exp(r)==R with fixed gt of 1 day

* fix typo and add reviewer

Co-authored-by: Sam Abbott <[email protected]>

---------

Co-authored-by: seabbs <[email protected]>
sbfnk added a commit that referenced this pull request May 3, 2024
* switch to directly calculated growth rate

* remove superseded function

* add news item

* avoid conversion

* add skips

* add test for exp(r)==R with fixed gt of 1 day

* fix typo and add reviewer

Co-authored-by: Sam Abbott <[email protected]>

---------

Co-authored-by: seabbs <[email protected]>
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2 participants