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actions-user committed Feb 22, 2024
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`{EpiNow2}` estimates the time-varying reproduction number on cases by
date of infection (using a similar approach to that implemented in
[`{EpiEstim}`](https://github.com/mrc-ide/EpiEstim)). True infections
treated as latent and unobserved, estimated, and then mapped to observed
data (for example cases by date of report) via a series of uncertain
[`{EpiEstim}`](https://github.com/mrc-ide/EpiEstim)). True infections,
treated as latent and unobserved, are estimated and then mapped to
observed data (for example cases by date of report) via one or more
delay distributions (in the examples in the package documentation these
are an incubation period and a reporting delay) and a reporting model
that can include weekly periodicity.
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