get_homologues-est

Release 20170828 (v3.0.7) ships with the following bug fixes and changes:

compare_clusters.pl now prints lists of genes in intersections of two sets when comparing 3 cluster sets
compare_clusters.pl -m now produces a FASTA version of the binary pangenome matrix so that fully-labelled trees can be inferred with software such as IQ-TREE
added question to FAQ section in manuals explaining a way to compute ML pangenome tress with boostrap and aLRT support (Thanks Uriel Alonso and Ruben Sancho)
updated manuals and plot_matrix_heatmap.sh with options -r (remove column names and cell contents) and -k (set name for color key X-axis)
added options -d (max no. decimals) and -x (filter matrix with regex) to plot_matrix_heatmap.sh
added parse_pangenome_matrix.pl -x to compute cluster intersection between taxa in a pangenome matrix
fixed bug in compare_clusters.pl when .cluster_list file is not parsed, due to previous changes in find_taxa_FASTA_array_headers