added options -a and -X and improved documentation (thanks Pablo!)

eead-csic-compbio · Oct 23, 2017 · 4187d7c · 4187d7c
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 18092017: fixed parsing of filenames with -I in cases where input files are like numbers.faa (thanks cdeai)
 20092017: removed especial chars >,<,& from cluster names in get_homologues.pl and get_homologues-est.pl (thanks Guella!)
 27092017: updated table of occupancy classes in the manual
+15102017: added options -a and -X; improved documentation (thanks Pablo!)
 23102017: despite the increase in size, updated BLAST+ to ncbi-blast-2.6.0+ as it handles better than 2.2.27+ alignments with low complexity (thanks Uriel Alonso!)