Change CRISPResso_status.txt format to JSON#46

Merged

mbowcut2 merged 41 commits intomasterfrom mckay/status_json

Apr 4, 2024

+36-25

Commits on Mar 14, 2024

Bug Fix - 367 (#35 )

mbowcut2
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Colelyman
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add json read for status file

mbowcut2
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Colelyman
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changed Formatter to json format

mbowcut2
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Colelyman
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fixed json access variable name: message

mbowcut2
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changed perentage_complete to numeric

mbowcut2
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changed status file to .json

mbowcut2
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Create integration_tests.yml

Snicker7
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Simplify name

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CRISPRESSO2_DIR environment variable

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Up one dir

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ls workspace

Snicker7
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Install CRISPResso and ydiff

Snicker7
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Clone repo instead of checkout

Snicker7
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submodule

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ls

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CRISPResso2_copy

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ls

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Update env

Snicker7
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Simplify

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Pull from githubactions branch

Snicker7
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Pull githubactions repo

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Checkout githubactions

Snicker7
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Run tests individually

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Pin plotly version

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Run all tests even if one fails

Snicker7
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Test on another branch

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Switch branch with token

Snicker7
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Update integration_tests.yml

Snicker7
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New makefile commands

Snicker7
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changed file to .json

mbowcut2
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Colelyman
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changed status to json file
mbowcut2
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Commits on Mar 15, 2024

Make JSON human readable by adding new lines
Colelyman
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Commits on Mar 20, 2024

GitHub actions integration tests (#48 )

committed

Commits on Mar 26, 2024

Move read filtering to after merging in CRISPResso (#39 )

Colelyman
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mbowcut2
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GitHub actions on pr (#51 )

Snicker7
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mbowcut2
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Run tests on PR only when opening PR (#53 )

Snicker7
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mbowcut2
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Update reports (#52 )

Colelyman
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mbowcut2
committed

Commits on Apr 1, 2024

Commits on Apr 4, 2024