Make all amplicons in amplicon_seq_arr uppercase

This fixes pinellolab#396
edilytics · Mar 28, 2024 · f08920e · f08920e
1 parent 30a5d19
commit f08920e
Showing 1 changed file with 1 addition and 1 deletion.
diff --git a/CRISPResso2/CRISPRessoCORE.py b/CRISPResso2/CRISPRessoCORE.py
@@ -1316,7 +1316,7 @@ def rreplace(s, old, new):
                 )
 
         else: #not auto
-            amplicon_seq_arr = args.amplicon_seq.split(",")
+            amplicon_seq_arr = list(map(lambda x: x.upper(), args.amplicon_seq.split(",")))
             amplicon_name_arr = args.amplicon_name.split(",")
             #split on commas, only accept empty values
             amplicon_min_alignment_score_arr = [float(x) for x in args.amplicon_min_alignment_score.split(",") if x]