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Bump version of setup-miniconda for pytest
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Colelyman committed Sep 27, 2024
1 parent f7f0c2b commit 0951101
Showing 1 changed file with 5 additions and 6 deletions.
11 changes: 5 additions & 6 deletions .github/workflows/pytest.yml
Original file line number Diff line number Diff line change
Expand Up @@ -2,7 +2,7 @@ name: Run Pytest

on:
push:

pull_request:
types: [opened, reopened]

Expand All @@ -20,9 +20,8 @@ jobs:
- uses: actions/checkout@v3

- name: Set up Conda
uses: conda-incubator/setup-miniconda@v2
uses: conda-incubator/setup-miniconda@v3
with:
mamba-version: "*"
channels: conda-forge,bioconda,defaults
auto-activate-base: false
activate-environment: test_env
Expand All @@ -32,15 +31,15 @@ jobs:
run: |
sudo apt-get update
sudo apt-get install -y gcc g++ bowtie2 samtools libsys-hostname-long-perl
- name: Install Pytest
run: |
pip install pytest pytest-cov
- name: Install CRISPResso
run: |
pip install -e .
- name: Run Pytest
run: |
run: |
pytest tests --cov CRISPResso2

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