Install CRISPResso and ydiff

edilytics · Feb 22, 2024 · 03b46f4 · 03b46f4
1 parent cb5f3ef
commit 03b46f4
Showing 1 changed file with 5 additions and 5 deletions.
diff --git a/.github/workflows/integration_tests.yml b/.github/workflows/integration_tests.yml
@@ -37,6 +37,11 @@ jobs:
         sudo apt-get update
         sudo apt-get install -y gcc g++ bowtie2 samtools libsys-hostname-long-perl
 
+    - name: Install CRISPResso2
+      run: |
+        pip install ydiff
+        pip install -e .
+
     - name: Copy C2_tests repo
       uses: actions/checkout@master
       with:
@@ -45,9 +50,4 @@ jobs:
 
     - name: Run Integration Tests
       run: |
-        pwd
-        ls
-        cd $GITHUB_WORKSPACE
-        pwd
-        ls
         make test