pr-checks: run hdf5 testsuite #3
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| name: HDF5 | ||
| on: [pull_request] | ||
| jobs: | ||
| hdf5-testsuite: | ||
| runs-on: ubuntu-22.04 | ||
| steps: | ||
| - name: Install dependencies | ||
| run: | | ||
| sudo apt update | ||
| sudo apt install -y --no-install-recommends wget | ||
| - uses: actions/checkout@v4 | ||
| with: | ||
| submodules: recursive | ||
| - name: Build Open MPI | ||
| run: | | ||
| ./autogen.pl | ||
| ./configure --prefix=/opt/openmpi --with-pmix=internal --with-prrte=internal --with-hwloc=internal --with-libevent=internal --disable-mpi-fortran --disable-oshmem | ||
| make -j ${nproc} && make install | ||
| - name: Install HDF5 | ||
| run: | | ||
| wget https://github.com/HDFGroup/hdf5/releases/latest/download/hdf5.tar.gz | ||
| tar -xzf hdf5.tar.gz | ||
| mv hdf5-1* hdf5 | ||
| cd hdf5 | ||
| export PATH=/opt/openmpi/bin:${PATH} | ||
| export LD_LIBRARY_PATH=/opt/openmpi/lib:${LD_LIBRARY_PATH} | ||
| echo ${PATH} | ||
| echo ${LD_LIBRARY_PATH} | ||
| ./configure --enable-parallel | ||
| make -j ${nproc} | ||
| - name: Run testsuite (ompio) | ||
| run: | | ||
| echo ${PATH} | ||
| echo ${LD_LIBRARY_PATH} | ||
| HDF5TestExpress=0 mpirun -np 4 ./testpar/t_shapesame | ||
| mpirun -np 4 ./testpar/t_filters_parallel | ||
| mpirun -np 4 ./testpar/testphdf5 | ||
| timeout-minutes: 10 | ||
| - name: Run testsuite (romio) | ||
| run: | | ||
| echo ${PATH} | ||
| echo ${LD_LIBRARY_PATH} | ||
| HDF5TestExpress=0 mpirun --mca io ^ompio -np 4 ./testpar/t_shapesame | ||
| mpirun --mca io ^ompio -np 4 ./testpar/t_filters_parallel | ||
| mpirun --mca io ^ompio -np 4 ./testpar/testphdf5 | ||
| timeout-minutes: 10 | ||
