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{bio}[GCCcore/6.3.0] structure v2.3.4 #5202

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{bio}[GCCcore/6.3.0] structure v2.3.4 #5202

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968f791
adding easyconfigs: structure-2.3.4.eb
cmeesters Oct 10, 2017
35f8c9c
new config file, since using 'proper' toolchain
cmeesters Oct 11, 2017
8589de2
using GCCcore as binutils obtained from system
cmeesters Oct 11, 2017
0e0ecad
removing outdated easyconfig
cmeesters Oct 11, 2017
a477fd5
now with binutils introduced
cmeesters Oct 11, 2017
3be7664
revised eb file
cmeesters Oct 27, 2017
28f8cb3
deleting old eb file
cmeesters Oct 27, 2017
a175092
revised eb file - corrected for style
cmeesters Oct 27, 2017
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27 changes: 27 additions & 0 deletions easybuild/easyconfigs/s/structure/structure-2.3.4.eb
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# This file is an EasyBuild recipy by Christian Meesters (2017)
# HPC-group University of Mainz (https://hpc.uni-mainz.de)

easyblock = 'MakeCp'
name = 'structure'
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please include an empty line above, to match the style of existing easyconfigs

version = '2.3.4'

homepage = 'https://web.stanford.edu/group/pritchardlab/structure.html'
description = """The program structure is a free software package for using multi-locus genotype data to investigate population structure. Its uses include infering the presence of distinct populations, assigning individuals to populations, studying hybrid zones, identifying migrants and admixed individuals, and estimating population allele frequencies in situations where many individuals are migrants or admixed. It can be applied to most of the commonly-used genetic markers, including SNPS, microsatellites, RFLPs and AFLPs."""

toolchain = {'name': 'dummy', 'version': 'dummy'}
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Any reason to use dummy rather than a 'proper' toolchain?


source_urls = ['https://web.stanford.edu/group/pritchardlab/structure_software/release_versions/v%(version)s/']
sources = ['structure_kernel_source.tar.gz']
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If no properly versioned source tarball is available, please let EasyBuild rename it on download, and also include a SHA256 checksum:

sources = [{'download_filename': 'structure_kernel_source.tar.gz', 'filename': SOURCE_TAR_GZ}]
checksums = ['...']

files_to_copy = ['structure']
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empty line above please


sanity_check_paths = {'files' : ['structure'],
'dirs' : []}
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please reformat to:

sanity_check_paths = {
    'files' : ['structure'],
    'dirs'  : [],
}

#buildininstalldir = True
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please remove commented out lines


#installopts = 'PREFIX=%(installdir)s'
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please remove commented out lines

moduleclass = 'bio'
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this should be the last line




allow_prepend_abs_path = True
modextrapaths = {'PATH': '%(installdir)s' }
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you don't need allow_prepend_abs_path = True here, just use:

modextrapaths = {'PATH': ''}

(the installation prefix is prepended automatically for all entries)

Also, please move this up, above the moduleclass = ... line