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Merge pull request #12552 from easybuilders/4.3.x
release EasyBuild v4.3.4
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| Original file line number | Diff line number | Diff line change |
|---|---|---|
| @@ -0,0 +1,29 @@ | ||
| easyblock = 'ConfigureMake' | ||
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| name = 'ABySS' | ||
| version = '2.2.5' | ||
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| homepage = 'https://www.bcgsc.ca/platform/bioinfo/software/abyss' | ||
| description = """Assembly By Short Sequences - a de novo, parallel, paired-end sequence assembler""" | ||
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| toolchain = {'name': 'foss', 'version': '2020b'} | ||
| toolchainopts = {'usempi': True} | ||
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| source_urls = ['http://github.com/bcgsc/abyss/releases/download/%(version)s/'] | ||
| sources = [SOURCELOWER_TAR_GZ] | ||
| checksums = ['38e886f455074c76b32dd549e94cc345f46cb1d33ab11ad3e8e1f5214fc65521'] | ||
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| dependencies = [ | ||
| ('Boost', '1.74.0'), | ||
| ('sparsehash', '2.0.4'), | ||
| ('SQLite', '3.33.0'), | ||
| ] | ||
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| configopts = 'CXXFLAGS="$CXXFLAGS -Wno-error=deprecated-copy"' | ||
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| sanity_check_paths = { | ||
| 'files': ["bin/ABYSS", "bin/ABYSS-P"], | ||
| 'dirs': [] | ||
| } | ||
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| moduleclass = 'bio' |
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| Original file line number | Diff line number | Diff line change |
|---|---|---|
| @@ -0,0 +1,38 @@ | ||
| ## | ||
| # Author: Robert Mijakovic <[email protected]> | ||
| ## | ||
| easyblock = 'MakeCp' | ||
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| name = 'ACTC' | ||
| version = '1.1' | ||
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| homepage = 'https://sourceforge.net/projects/actc' | ||
| description = "ACTC converts independent triangles into triangle strips or fans." | ||
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| toolchain = {'name': 'GCCcore', 'version': '10.2.0'} | ||
| toolchainopts = {'pic': True} | ||
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| source_urls = [SOURCEFORGE_SOURCE] | ||
| sources = [SOURCELOWER_TAR_GZ] | ||
| checksums = ['3a1303291629b9de6008c3c9d7b020a4b854802408fb3f8222ec492808c8b44d'] | ||
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| builddependencies = [('binutils', '2.35')] | ||
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| buildopts = 'CC="$CC" CFLAGS="$CFLAGS"' | ||
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| files_to_copy = [ | ||
| (['tcsample', 'tctest', 'tctest2'], 'bin'), | ||
| (['tc.h'], 'include/ac'), | ||
| (['libactc.a'], 'lib'), | ||
| 'COPYRIGHT', 'manual.html', 'prims.gif', 'README', | ||
| ] | ||
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| sanity_check_paths = { | ||
| 'files': ['bin/tctest', 'bin/tctest2', 'bin/tcsample', 'include/ac/tc.h', 'lib/libactc.a', | ||
| 'COPYRIGHT', 'manual.html', 'prims.gif', 'README'], | ||
| 'dirs': [], | ||
| } | ||
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| modextrapaths = {'CPATH': 'include/ac'} | ||
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| moduleclass = 'lib' |
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| Original file line number | Diff line number | Diff line change |
|---|---|---|
| @@ -0,0 +1,30 @@ | ||
| # | ||
| # This file is an EasyBuild reciPY as per https://github.com/easybuilders/easybuild | ||
| # | ||
| # Author: Robert Mijakovic <[email protected]> | ||
| # reciPY derived from preexisting reciPy for GCCcore-9.3.0. | ||
| # | ||
| name = 'AOCC' | ||
| version = '2.3.0' | ||
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| homepage = 'https://developer.amd.com/amd-aocc/' | ||
| description = "AMD Optimized C/C++ & Fortran compilers (AOCC) based on LLVM 11.0" | ||
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| # Clang also depends on libstdc++ during runtime, but this dependency is | ||
| # already specified as the toolchain. | ||
| toolchain = {'name': 'GCCcore', 'version': '10.2.0'} | ||
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| source_urls = ['http://developer.amd.com/wordpress/media/files/'] | ||
| sources = ['aocc-compiler-%(version)s.tar'] | ||
| checksums = [ | ||
| '9f8a1544a5268a7fb8cd21ac4bdb3f8d1571949d1de5ca48e2d3309928fc3d15', # aocc-compiler-2.3.0.tar | ||
| ] | ||
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| dependencies = [ | ||
| ('binutils', '2.35'), | ||
| ('ncurses', '6.2'), | ||
| ('zlib', '1.2.11'), | ||
| ('libxml2', '2.9.10'), | ||
| ] | ||
|
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| moduleclass = 'compiler' |
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| Original file line number | Diff line number | Diff line change |
|---|---|---|
| @@ -0,0 +1,27 @@ | ||
| ## | ||
| # Author: Robert Mijakovic <[email protected]> | ||
| ## | ||
| name = 'AOCC' | ||
| version = '3.0.0' | ||
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| homepage = 'https://developer.amd.com/amd-aocc/' | ||
| description = "AMD Optimized C/C++ & Fortran compilers (AOCC) based on LLVM 11.0" | ||
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| # Clang also depends on libstdc++ during runtime, but this dependency is | ||
| # already specified as the toolchain. | ||
| toolchain = {'name': 'GCCcore', 'version': '10.2.0'} | ||
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| source_urls = ['http://developer.amd.com/wordpress/media/files/'] | ||
| sources = ['aocc-compiler-%(version)s.tar'] | ||
| checksums = [ | ||
| '4ff269b1693856b9920f57e3c85ce488c8b81123ddc88682a3ff283979362227', # aocc-compiler-3.0.0.tar | ||
| ] | ||
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| dependencies = [ | ||
| ('binutils', '2.35'), | ||
| ('ncurses', '6.2'), | ||
| ('zlib', '1.2.11'), | ||
| ('libxml2', '2.9.10'), | ||
| ] | ||
|
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| moduleclass = 'compiler' |
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| Original file line number | Diff line number | Diff line change |
|---|---|---|
| @@ -0,0 +1,44 @@ | ||
| easyblock = 'PythonBundle' | ||
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| name = 'ASE' | ||
| version = '3.20.1' | ||
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| homepage = 'https://wiki.fysik.dtu.dk/ase' | ||
| description = """ASE is a python package providing an open source Atomic Simulation Environment | ||
| in the Python scripting language. | ||
| From version 3.20.1 we also include the ase-ext package, it contains optional reimplementations | ||
| in C of functions in ASE. ASE uses it automatically when installed.""" | ||
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| toolchain = {'name': 'fosscuda', 'version': '2020b'} | ||
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| dependencies = [ | ||
| ('Python', '3.8.6'), | ||
| ('SciPy-bundle', '2020.11'), | ||
| ('Flask', '1.1.2'), | ||
| ('matplotlib', '3.3.3'), | ||
| ('Tkinter', '%(pyver)s'), # needed by GUI of ASE | ||
| ('spglib-python', '1.16.0'), # optional | ||
| ] | ||
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| use_pip = True | ||
| sanity_pip_check = True | ||
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| exts_list = [ | ||
| ('ase', version, { | ||
| 'checksums': ['72c81f21b6adb907595fce8d883c0231301cbd8e9f6e5ce8e98bab927054daca'], | ||
| }), | ||
| ('ase-ext', '20.9.0', { | ||
| 'checksums': ['a348b0e42cf9fdd11f04b3df002b0bf150002c8df2698ff08d3c8fc7a1223aed'], | ||
| }), | ||
| ] | ||
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| sanity_check_paths = { | ||
| 'files': ['bin/ase'], | ||
| 'dirs': ['lib/python%(pyshortver)s/site-packages'], | ||
| } | ||
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| # make sure Tkinter is available, otherwise 'ase gui' will not work | ||
| sanity_check_commands = ["python -c 'import tkinter' "] | ||
|
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| moduleclass = 'chem' |
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