Merge pull request #14342 from sassy-crick/20211115175131_new_pr_SAMt…

…ools114

{bio}[GCC/11.2.0] SAMtools v1.14

easybuild/easyconfigs/s/SAMtools/SAMtools-1.14-GCC-11.2.0.eb

@@ -0,0 +1,37 @@
+##
+# This is a contribution from DeepThought HPC Service, Flinders University, Adelaide, Australia
+# Homepage:     https://staff.flinders.edu.au/research/deep-thought
+#
+# Authors::     Robert Qiao <[email protected]>
+# License::     MIT
+#
+# Notes::
+#
+# Updated to 1.14 and gcc-11.2.0 
+# J. Sassmannshausen / GSTT
+
+name = 'SAMtools'
+version = '1.14'
+
+homepage = 'https://www.htslib.org/'
+description = """SAM Tools provide various utilities for manipulating alignments in the SAM format, 
+ including sorting, merging, indexing and generating alignments in a per-position format."""
+
+toolchain = {'name': 'GCC', 'version': '11.2.0'}
+toolchainopts = {'pic': True}
+
+source_urls = ['https://github.com/samtools/%(namelower)s/releases/download/%(version)s']
+sources = [SOURCELOWER_TAR_BZ2]
+checksums = ['9341dabaa98b0ea7d60fd47e42af25df43a7d3d64d8e654cdf852974546b7d74']
+
+# The htslib component of SAMtools >= 1.4 uses zlib, bzip2 and lzma compression.
+# The latter is currently provided by XZ.
+dependencies = [
+    ('ncurses', '6.2'),
+    ('zlib', '1.2.11'),
+    ('bzip2', '1.0.8'),
+    ('XZ', '5.2.5'),
+    ('cURL', '7.78.0'),
+]
+
+moduleclass = 'bio'