{mpi}[NVHPC/24.9] Add OpenMPI 5.0.3

Signed-off-by: Jan André Reuter <[email protected]>

easybuild/easyconfigs/o/OpenMPI/OpenMPI-5.0.3-NVHPC-24.9-CUDA-12.6.0.eb

@@ -0,0 +1,63 @@
+name = 'OpenMPI'
+version = '5.0.3'
+
+homepage = 'https://www.open-mpi.org/'
+description = """The Open MPI Project is an open source MPI-3 implementation."""
+
+toolchain = {'name': 'NVHPC', 'version': '24.9-CUDA-12.6.0'}
+
+source_urls = ['https://www.open-mpi.org/software/ompi/v%(version_major_minor)s/downloads']
+sources = [SOURCELOWER_TAR_BZ2]
+patches = [
+    'OpenMPI-5.0.3_fix_hle_make_errors.patch',
+    'OpenMPI-5.0.3_disable_opal_path_nfs_test.patch',
+    ('OpenMPI-5.0.2_build-with-internal-cuda-header.patch', 1)
+]
+checksums = [
+    {'openmpi-5.0.3.tar.bz2':
+     '990582f206b3ab32e938aa31bbf07c639368e4405dca196fabe7f0f76eeda90b'},
+    {'OpenMPI-5.0.3_fix_hle_make_errors.patch':
+     '881c907a9f5901d5d6af41cd33dffdcecba4a67a9e5123e602542aea57a80895'},
+    {'OpenMPI-5.0.3_disable_opal_path_nfs_test.patch':
+     '75d4417e35252ea3a19b2792f1b06e9aeb408c253aa4921d77226d57b71dee45'},
+    {'OpenMPI-5.0.2_build-with-internal-cuda-header.patch':
+     'f52dc470543f35efef10d651dd159c771ae25f8f76a420d20d87abf4dc769ed7'},
+]
+
+builddependencies = [
+    ('pkgconf', '2.2.0'),
+    ('Perl', '5.38.2'),
+    ('Autotools', '20231222'),
+]
+
+dependencies = [
+    ('zlib', '1.3.1'),
+    ('hwloc', '2.10.0'),
+    ('libevent', '2.1.12'),
+    ('UCX', '1.16.0'),
+    ('UCX-CUDA', '1.16.0', '-CUDA-%(cudaver)s'),
+    ('libfabric', '1.21.0'),
+    ('PMIx', '5.0.2'),
+    ('PRRTE', '3.0.5'),
+    ('UCC', '1.3.0'),
+    ('UCC-CUDA', '1.3.0', '-CUDA-%(cudaver)s'),
+]
+
+# CUDA related patches and custom configure option can be removed if CUDA support isn't wanted.
+preconfigopts = 'nvc -Iopal/mca/cuda/include -shared opal/mca/cuda/lib/cuda.c -o opal/mca/cuda/lib/libcuda.so && '
+# Update configure to include changes from the "disable_opal_path_nfs_test" patch
+preconfigopts += './autogen.pl --force && '
+
+configopts = '--with-cuda=%(start_dir)s/opal/mca/cuda '
+# Required to prevent internal compiler error in opal.
+configopts += '--enable-alt-short-float=no '
+# Set PGI compilers manually, as NVHPC compilers are not correctly detected
+configopts += 'CC=pgcc CXX=pgc++ FC=pgfortran '
+
+# site specific options
+# configopts += '--without-psm2 '
+# configopts += '--disable-oshmem '
+# configopts += '--with-gpfs '
+configopts += '--with-slurm '
+
+moduleclass = 'mpi'

easybuild/easyconfigs/o/OpenMPI/OpenMPI-5.0.3_disable_opal_path_nfs_test.patch

@@ -0,0 +1,33 @@
+Disable opal_path_nfs test in OpenMPI 5.0.3 as this test can easily fail on some systems,
+when NFS mounts are used. Generally, this test is flaky, which may prevent users
+from installing OpenMPI for no apparent reason.
+
+diff --git a/test/util/Makefile.am b/test/util/Makefile.am
+index e5ad472..33d63c4 100644
+--- a/test/util/Makefile.am
++++ b/test/util/Makefile.am
+@@ -38,7 +38,6 @@ AM_CPPFLAGS = -I$(top_srcdir)/test/support
+
+ check_PROGRAMS = \
+ 	opal_bit_ops \
+-	opal_path_nfs \
+ 	bipartite_graph \
+         opal_sha256
+
+@@ -80,11 +79,11 @@ opal_bit_ops_LDADD = \
+         $(top_builddir)/test/support/libsupport.a
+ opal_bit_ops_DEPENDENCIES = $(opal_path_nfs_LDADD)
+
+-opal_path_nfs_SOURCES = opal_path_nfs.c
+-opal_path_nfs_LDADD = \
+-        $(top_builddir)/opal/lib@[email protected] \
+-        $(top_builddir)/test/support/libsupport.a
+-opal_path_nfs_DEPENDENCIES = $(opal_path_nfs_LDADD)
++# opal_path_nfs_SOURCES = opal_path_nfs.c
++# opal_path_nfs_LDADD = \
++#         $(top_builddir)/opal/lib@[email protected] \
++#         $(top_builddir)/test/support/libsupport.a
++# opal_path_nfs_DEPENDENCIES = $(opal_path_nfs_LDADD)
+
+ #opal_os_path_SOURCES = opal_os_path.c
+ #opal_os_path_LDADD = \

easybuild/easyconfigs/o/OpenMPI/OpenMPI-5.0.3_fix_hle_make_errors.patch

@@ -0,0 +1,25 @@
+On JUWELS, building OpenMPI 5.0.5 with NVHPC 24.9 fails with errors
+related to `__ATOMIC_HLE_ACQUIRE` and `__ATOMIC_HLE_RELEASE` not being
+defined. Add an additional macro check to let the build succeed.
+
+--- a/opal/include/opal/sys/gcc_builtin/atomic.h	2024-07-23 01:23:20.567556032 +0200
++++ a/opal/include/opal/sys/gcc_builtin/atomic.h	2024-10-02 12:19:53.130698758 +0200
+@@ -187,7 +187,7 @@
+  *
+  *********************************************************************/
+
+-#if defined(__HLE__)
++#if defined(__HLE__) && defined(__ATOMIC_HLE_ACQUIRE) && defined(__ATOMIC_HLE_RELEASE)
+
+ #    include <immintrin.h>
+
+@@ -225,7 +225,7 @@
+                      __ATOMIC_RELEASE | __ATOMIC_HLE_RELEASE);
+ }
+
+-#else  /* #if defined(__HLE__) */
++#else  /* #if defined(__HLE__) && defined(__ATOMIC_HLE_ACQUIRE) && defined(__ATOMIC_HLE_RELEASE) */
+
+ #include "opal/sys/atomic_impl_spinlock.h"
+
+