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@dynverse

dynverse: benchmarking, constructing and interpreting single-cell trajectories

The dynverse is an open set of packages to benchmark, construct and interpret single-cell trajectories. See https://dynverse.org for an overview

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  1. dyno dyno Public

    Inferring, interpreting and visualising trajectories using a streamlined set of packages 🦕

    R 170 32

  2. dynbenchmark dynbenchmark Public

    Comparison of methods for trajectory inference on single-cell data 🥇

    R 200 42

  3. dynmethods dynmethods Public

    A collection of 50+ trajectory inference methods within a common interface 📥📤

    R 120 26

  4. dyngen dyngen Public

    Simulating single-cell data using gene regulatory networks 📠

    HTML 73 6

  5. lmds lmds Public

    Landmark Multi-Dimensional Scaling

    R 8 1

Repositories

Showing 10 of 129 repositories
  • anndata Public

    Annotated multivariate observation data in R

    dynverse/anndata’s past year of commit activity
    R 43 4 6 1 Updated Nov 15, 2024
  • dyngen Public

    Simulating single-cell data using gene regulatory networks 📠

    dynverse/dyngen’s past year of commit activity
    HTML 73 6 18 1 Updated Feb 21, 2024
  • babelwhale Public

    Talking to Docker and Singularity containers

    dynverse/babelwhale’s past year of commit activity
    R 24 6 2 1 Updated Dec 27, 2023
  • dynmethods Public

    A collection of 50+ trajectory inference methods within a common interface 📥📤

    dynverse/dynmethods’s past year of commit activity
    R 120 26 19 0 Updated Dec 21, 2023
  • lmds Public

    Landmark Multi-Dimensional Scaling

    dynverse/lmds’s past year of commit activity
    R 8 1 2 0 Updated Sep 22, 2023
  • dynbenchmark Public

    Comparison of methods for trajectory inference on single-cell data 🥇

    dynverse/dynbenchmark’s past year of commit activity
    R 200 42 4 0 Updated Aug 30, 2023
  • dynwrap Public

    A common data format and inference environment for single-cell trajectories 📦

    dynverse/dynwrap’s past year of commit activity
    R 15 7 17 0 Updated Jul 18, 2023
  • dynfeature Public

    Extracting relevant features from single-cell trajectories 🎯

    dynverse/dynfeature’s past year of commit activity
    R 0 3 0 0 Updated Mar 1, 2023
  • dynutils Public

    Common Functionality for the 'dynverse' Packages

    dynverse/dynutils’s past year of commit activity
    R 3 2 0 0 Updated Oct 6, 2022
  • dynplot2 Public

    A grammar of graphics for single-cell trajectories 📈

    dynverse/dynplot2’s past year of commit activity
    R 0 0 2 1 Updated Dec 16, 2021
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