| Dataset | Study | Species | Normalization | nSamples/Cells | nCellTypes | Platform | Tissues |
|---|---|---|---|---|---|---|---|
| BlueprintEncode | Martens JHA and Stunnenberg HG (2013), The ENCODE Project Consortium (2012), Aran D (2019) | Homo Sapiens | TPM | 259 | 43 | RNA-seq | Mixed |
| ImmGenData | The Immunological Genome Project Consortium (2008), Aran D (2019) | Mus Musculus | RMA | 843 | 19 | Microarray | Immune/Blood |
| Immune Compendium | Zaitsev A (2022) | Homo Sapiens | TPM | 3626 | 40 | RNA-seq | Immune/Blood |
| LM22 | Chen B (2019) | Homo Sapiens | RMA | 113 | 22 | Microarray | Mixed |
| MouseRNAseqData | Benayoun B (2019) | Mus Musculus | TPM | 358 | 18 | RNA-seq | Mixed |
| Pan Cancer | Nofech-Mozes I (2023) | Homo Sapiens | Counts | 25084 | 29 | scRNA-seq | Tumor |
| Tabula Muris Blood | The Tabula Muris Consortium (2018) | Mus Musculus | Counts | 11145 | 6 | scRNA-seq | Bone Marrow, Spleen, Thymus |
| Tabula Sapiens Blood | The Tabula Sapiens Consortium (2022) | Homo Sapiens | Counts | 11921 | 18 | scRNA-seq | Blood, Lymph_Node, Spleen, Thymus, Bone Marrow |
| TME Compendium | Zaitsev A (2022) | Homo Sapiens | TPM | 8146 | 25 | RNA-seq | Tumor |
We invite users to upload their own xCell2 objects to https://github.com/dviraran/ and update this table accordingly.